Ontology
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Symbolic Separation: Grounding Deep Agents in Knowledge Graphs for Trustworthy Operational Data Analytics
2026-09-15 12:38:43Baibek Davletiyarov, Junaid Ahmed Khan, Andrea BartoliniAbstract
Generative AI promises natural language access to the massive numerical telemetry of data centers and Industry 4.0 installations, yet text-to-query and tool-using agents stay unreliable: even frontier models answer little more than half of real-world database questions, and far fewer of the multi-step, operational ones, because the LLM must compose how heterogeneous sources relate and hallucinates the relations, not just the fields. We propose symbolic separation: a deep agent reasons freely but may act on data only through an ontology-constrained Virtual Knowledge Graph with deterministic pre-execution validation. Unlike a tool API's interface contract, this domain-semantic contract turns a complex question into one validated graph traversal instead of LLM-inferred joins. Instantiated as the Neurosymbolic Deep Analyst and evaluated on 49.9 TB of superconputer telemetry against a rigid workflow and a non-symbolic ablation, it raises end-to-end task success from 43% to 86%, prevents silent data-integrity errors that no syntactic check catches, and cuts token cost by 2.4x, letting a smaller on-premise model outperform a larger one.
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https://arxiv.org/abs/2609.17107
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EvoOntology: A Self-Evolving Ontology Layer for Data Agents
2026-09-14 15:59:24Meiduo Chong, Shaolei Zhang, Ju Fan, Xiaoyong DuAbstract
Data agents aim to fulfill natural-language instructions over heterogeneous data, including tables, files, and databases. However, data agents face a challenging agent-data gap: heterogeneous data resides outside the agent, while the agent can access it (e.g., column names and file paths) only through generic tools. Existing approaches either let agents directly explore raw data sources or inject manually constructed semantic layers into prompts. However, neither scales well to large heterogeneous data sources nor adapts to different agent behaviors. In this paper, we introduce EvoOntology, a self-evolving ontology layer for data agents. EvoOntology encapsulates the ontology as an MCP server comprising a schema layer, a content layer, and a tool layer, enabling agents to actively query and interact with the ontology at runtime. To this end, we introduce a builder agent for autonomous ontology construction and a self-evolution loop that continuously refines the ontology through attribution-guided typed edits that are accepted only after a backbone-conditional paired evaluation. Experiments on three well-adopted data-agent benchmarks with four LLM backbones demonstrate that EvoOntology consistently outperforms strong baselines and existing semantic-layer approaches, effectively bridging the agent-data gap and enabling more effective interaction with heterogeneous data. Code: this https URL
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https://arxiv.org/abs/2609.15779
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From Ideas to Actions: A Public-Data Decision-Support Toolchain Across the Venture Lifecycle
2026-09-14 08:40:08Lei Qu (Shanghai Xing Yun Zhi Li AI Institute)Abstract
Founders face two linked decisions: whether to pursue an idea before founding, and which operating actions and capital partners fit afterward. We present a public-data decision-support toolchain combining time-bounded proposal profiling, market and moat checks, and deterministic aggregation with auditable investor-company event chains for retrospective analysis. Pre-founding: (a) After threshold selection on 198 development companies, the frozen pipeline achieves F0.5=0.5357 [0.412, 0.655] on an independent, row-disjoint 198-company validation sample. On the combined 396 rows, the Full Pipeline scores 0.6301 versus 0.2734 for a paired Raw LLM baseline. Post-stratification of 1,027 completed cases in a separate scale cohort yields 0.6506 [0.598, 0.707]; the run remains incomplete. A 377-row composition-matched check yields 0.6573. (b) The AI-inference study identifies distribution-layer businesses as a replicable path to independent profitability with a limited revenue ceiling, and frontier-model ownership as a path to capital-market upside at exceptional capital cost. Post-founding: (a) Public sources support auditable event-chain analysis. (b) In the chip-company study, sustained product, customer, and supply-chain progress is associated with better observed outcomes; financing alone does not establish operating progress. (c) Financing comprises 79% of confirmed visible post-investment actions. Evidence tentatively favors acquisition-experienced strategic corporate investors for acquisition-oriented founders and financing-led institutional VCs with fewer observed control events for independence-oriented founders. Findings are developmental and observational, not causal guarantees or investment advice. We release shared ontology, provenance-bearing EventChain data, schemas, benchmarks, and executable skills for audit, reuse, and extension.
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https://arxiv.org/abs/2609.15219
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Natural Language Knowledge Graph Query Execution: Leveraging Controlled Semantics in the LLM Context Window
2026-09-13 16:36:40Blake G. FitchAbstract
Large Language Model (LLM) applications often transfer domain concepts into the model's context informally, through prompt prose, schema dumps, and examples. We show that for database queries, data model concepts pass to LLMs more effectively through representations whose vocabulary terms carry declared, machine-readable semantics (controlled semantics). NLKGQ is a working system and reusable framework that does this for data modeled in a knowledge graph. A formal OWL ontology serves as the transfer mechanism, concentrating the meaning of the data into semantically precise tokens the model can use directly. In a single LLM call, NLKGQ places in the context a system prompt instructing on SPARQL, the complete domain OWL ontology, and a domain-specific prompt addition, together with the user's natural language query. The model then generates the SPARQL query directly, zero-shot. Where the native vocabulary of an existing database or federation of databases is opaque, a wrapper ontology substitutes clean terms and a runtime rewriter restores the native forms. Evaluating on DBLP-QuAD 2.0 showed that its scores depend on the graph snapshot, the endpoint used, and the wording of its machine-generated questions, so we propose DBLP-QuAD 3.1, which maintains the intent of 2.0 while making reference results deterministic, revising reference SPARQL where needed, and rewriting the natural language questions, with a frontier model, to state each reference query's intent clearly and completely. We evaluate on the DBLP-QuAD 2.0 benchmark (57.6% Match under deterministic re-scoring), DBLP-QuAD 3.1 (89.9% Match on 1,000 questions), SemOpenAlex (98% Match against a published baseline's 86% on the identical test set), and neuroimaging metadata (100%).
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https://arxiv.org/abs/2609.14652
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ORDER: A Fictitious-World Benchmark for Domain-Adaptive Embodied AI
2026-09-13 07:21:22Sai Krishna Reddy Sathi, Anuj TiwariAbstract
Adapting language models to new domains via continual pre-training raises a basic evaluation problem: if the training corpus overlaps with what the model already knows, performance gains cannot be cleanly attributed to new learning rather than pre-existing knowledge. This matters most for knowledge-intensive, task-light (KHTL) robot deployments - pharmaceutical dispensing, hazardous-material handling, facility-specific protocols, where the physical task is simple but the governing rules are proprietary and safety-critical, and where extensive live testing is costly or unsafe. We introduce ORDER (Ontology-driven Decision-making for Embodied Reasoning), a benchmark built on a fictitious world: a 342,069-token synthetic corpus defining a self-consistent physics that cannot appear in any model's pre-training data. ORDER pairs a 500-question knowledge test (ORDER-BENCH) with a harder compositional task, ORDER-SPATIAL: ordering objects for safe manipulation across both familiar and entirely novel scenes. GPT-4.1 without adaptation scores below chance on ORDER-SPATIAL (Kendall's tau = 0.441), showing its priors actively conflict with the invented physics. After continual pre-training, small models improve substantially on both familiar and novel scenes alike evidence of genuine world-model induction rather than memorization. We then carry this through to a robot pipeline: models that answer the knowledge test well often cannot produce valid, executable plans without a further skill-adaptation stage, after which small, fully offline models outperform GPT-4.1 even when GPT-4.1 is given retrieval access to the same rules (Kendall's tau = 0.848 vs. 0.606), on a full perception-to-execution loop demonstrated on a simulated iiwa7 arm with human-in-the-loop correction. Throughout, ORDER-SPATIAL performance, not knowledge-test accuracy is what predicts real plan quality.
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https://arxiv.org/abs/2609.22285
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Surprising Effectiveness of Self-Demonstrations in Enhancing Schema-Ontology Mapping with LLMs
2026-09-12 07:42:55Siddhesh Thombre, Manasi Patwardhan, Sunita SarawagiAbstract
Integrating heterogeneous relational databases into a centralized ontology remains a persistent challenge in enterprise knowledge representation, primarily due to semantic heterogeneity, cryptic schema naming, missing metadata, and the abstraction gap between relational schemas and ontological models. Although large language models (LLMs) offer strong semantic reasoning capabilities, we show that directly applying them through one-shot prompting or naive multi-stage pipelines leads to poor performance for schema-ontology mapping. This paper presents a self-demonstration-driven approach that combines a neuro-symbolic task decomposition with a novel mechanism for automatically generating pattern-guided, dependency-aware demonstrations to address this integration challenge. Our approach incorporates two key strategies to achieve substantial accuracy gains over existing LLM-based schema integration methods: (i) a neuro-symbolic decomposition of the task into cascaded sub-tasks, where symbolic constraints structure the search space and LLMs perform semantic reasoning within each focused sub-task, and (ii) self-generated demonstrations guided by domain-agnostic patterns to supervise each sub-task. Experiments on three of the most challenging scenarios from the RODI benchmark show that our approach achieves state-of-the-art performance, substantially outperforming (25 percentage points F1 improvements) both traditional schema-to-ontology mapping techniques and recent LLM-based schema-to-ontology and schema matching approaches. Ablation studies further reveal the significant benefits of pattern-guided self-demonstrations and the complementary benefits of neuro-symbolic task decomposition.
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https://arxiv.org/abs/2609.13776
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HemaHier: Chain-Conditioned Ordinal Hierarchies for Lineage-Aware Bone-Marrow Cytology
2026-09-11 13:30:20Afshin Bozorgpour, Peter Sch\"uffler, Edgar Jost, Dorit MerhofAbstract
Bone-marrow cytology is inherently structured: each cell belongs to a hematopoietic lineage, and many cell types lie on ordered maturation trajectories. Standard flat classifiers ignore this structure, treating a mild same-lineage confusion the same as a severe cross-lineage mistake and predicting only discrete labels. We propose HemaHier, an ordinal-hierarchical prediction head for a frozen or lightly adapted cytology foundation model. Its central component is a chain-conditioned maturity score that reads a single maturity value under a per-chain query, supervised only on biologically valid healthy chains, while dysplastic and off-chain cell types remain classes but are excluded from maturity supervision. Fine and lineage predictions are coupled through a shared posterior that guarantees hierarchical consistency, and a staged objective first stabilizes recognition, then adds lineage and maturity supervision. On three bone-marrow datasets under a shared ontology, HemaHier achieves competitive recognition while reducing biologically severe errors and adding a within-lineage maturity ordering that flat classifiers lack. Code is available at this https URL.
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https://arxiv.org/abs/2609.12835
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From Document Silos to Process Intelligence: A Multi-Layer Knowledge Graph for CMC Process Development
2026-09-10 12:59:04Reza Amirmoshiri, Faryad Sahneh, Yasser JangjouAbstract
Chemistry, Manufacturing and Controls (CMC) process development generates an enormous body of technical information across a multi-stage, knowledge-intensive continuum from drug discovery to commercial manufacturing. This knowledge is traditionally fragmented across functions and heterogeneous formats, causing traceability gaps and significant knowledge-management costs during technology transfer and regulatory filing. We present a modular agentic-AI platform that converts a heterogeneous corpus of process-development documents into a queryable, dual-layer knowledge graph. A base knowledge layer builds a lexical graph with a Document-Section-Chunk hierarchy through lossless ingestion of digital, scanned, handwritten, and multilingual documents, while an intelligence layer extracts ontology-aligned entities and bridges cross-document concepts through a provenance-anchored domain graph. LLM agents operate across both layers, selecting the retrieval path best suited to each question. We evaluate the lexical layer with a novel three-tier protocol measuring the deployment-fidelity of a retrieval-augmented generation (RAG) system on proprietary data, demonstrated on 505 questions curated from 38 development reports of a Sanofi small-molecule program. Tier-1 multiple-choice accuracy of 95% signals strong platform reliability; the stricter Tier-2 LLM-judge pass rate of 85%, which degrades on comparative and corpus-wide questions, reveals a failure taxonomy that Tier-1 accuracy alone fails to capture. A router agent selects between layers according to question type. We anticipate this protocol will enable future designers of agentic platforms to assess their systems against nonpublic databases, and that graph-based architectures will see broader adoption in pharma as a means of transforming fragmented document repositories into structured process intelligence.
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https://arxiv.org/abs/2609.11493
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Fortunate Recall: Ontology-Driven Memory Lifecycle Management for Persistent Coherence in LLMs
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Current LLM memory systems treat all personal facts identically, so stores grow without bound while retrieval precision degrades. The core challenge is lifecycle management: which memories should persist, which should be replaced, and at what rate, conditioned on the behavioral type of each fact. Fortunate Recall (FR) is a composable policy layer that classifies personal facts into a 10+1 behavioral ontology and applies category-specific lifecycle policies (differential temporal decay, slot-key supersession, event-time validity, and category-aware retrieval routing) as deterministic functions over LLM-extracted metadata. FR-Bank, our infrastructure-independent implementation, reaches a 76.9% pass rate on LifecycleBench, a new 516-question temporal-disambiguation benchmark, ahead of Mem0, A-MEM, Memory-R1, and MemoryOS (61% to 70.5%), and 75.2% on the full LongMemEval-S under the canonical Wu et al. judge protocol, so lifecycle policies impose no measurable cost on standard retrieval. A pre-registered ablation locates the gains: replacing the typed layer with three generic lifecycle primitives leaves correctness statistically unchanged (-1.7pp, 95% CI [-6.0, +2.7]), so the generic lifecycle metadata carries the correctness advantage, while the behavioral ontology carries calibration, halving downstream confabulation (12.0% vs 24.2%, p<0.001). End-to-end, FR-Bank cuts confabulation from Mem0's 45.1% to 22.4% over answered queries and from 32.2% to 13.0% over all queries while answering more of them correctly (31.2% vs 18.6%); the ranking replicates on the open-weight Kimi K2.5. The decomposition transfers to BEAM, an independently built benchmark: 46.8% correct vs Mem0's 32.9% over 280 questions, with the ontology's benefit concentrated in contradiction resolution and saturating near seven policy clusters. The ontology, benchmark, and code are released.
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https://arxiv.org/abs/2609.10413
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OntologyAligner: Ontology-Aligned Retrieval and Hierarchy-Guided Large Language Model Reranking for Biomedical Ontology Normalization
2026-09-09 11:30:25Jie Song, Zhichuan Xu, Ziyu Lu, Meng Xiao, Cheng Bi, Yuxin Zhang, Xin Zheng, Xiaoran Li, Qiongfang Cao, Hao Yang, Bairong ShenAbstract
Biomedical ontology normalization maps free-text expressions to standardized concepts, enabling consistent integration and analysis of biomedical data. This task remains challenging because lexical variation and subtle distinctions among hierarchically related concepts can obscure concept boundaries. We present OntologyAligner, a three-stage framework that combines ontology-aligned retrieval, large language model candidate reranking, and selective hierarchy-guided refinement. We also construct PhenoNormBench, a unified benchmark comprising 13,390 samples from seven Human Phenotype Ontology datasets. OntologyAligner achieved state-of-the-art performance on HPO normalization, with 88.78% Macro Top-1 Accuracy and 86.75% Micro Top-1 Accuracy, exceeding the strongest baseline by 4.85 and 5.07 percentage points, respectively. Ablation analyses showed complementary contributions from all three stages, and sensitivity analyses demonstrated stability across candidate-set sizes and model backbones. Applications to MONDO, MEDIC, and NCBITaxon further established portability to other ontologies. OntologyAligner offers a generalizable framework for accurate mapping of biomedical text to structured ontology concepts. PhenoNormBench and the code are publicly available at this https URL.
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https://arxiv.org/abs/2609.10055
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Can We Trust Video Hallucination Detectors? VidHalLoc for Evaluating the Evaluators
2026-09-09 08:52:23Xinyu Chen, Adnan Mahmood, Mark DrasAbstract
Video-language models and video agents can produce hallucinations that conflict with spatiotemporal evidence. Existing benchmarks mainly evaluate model hallucinations, and heterogeneous mechanisms make detector reliability difficult to compare. We introduce VidHalLoc, a benchmark that evaluates hallucination detection methods under a unified diagnostic evaluation protocol using 2,000 adversarial hallucination samples across Video Question Answering and Video Captioning tasks, spanning Ontology and Dynamic hallucination categories. To construct VidHalLoc efficiently, we introduce VideoHALO, a Harness Engineering-informed multi-agent workflow that decomposes data construction into four executable stages supported by a memory system and a communication protocol. Evaluation of fifteen methods reveals that the four dedicated detectors peak at an Overall accuracy of only 34.63%, indicating limited reliability across video hallucination types [Dataset Repository: this https URL].
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https://arxiv.org/abs/2609.09895
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OntoKG-EQ: A provenance-grounded, competency-question-governed knowledge graph for auditable analyst querying
2026-09-08 15:11:38Furqan Nasir, Muhammad Atif Saeed, Muhammad Ehsan, Sher Jeel Ahmad, Abdul Moiz AltafAbstract
Analysts in emerging equity markets keep answering the same questions. Did fundamentals match the market's response? How does the local currency co-move with returns? Which firms outperform sector and benchmark, and which disclosures coincide with abnormal trading? These answers come from ad-hoc spreadsheets that are hard to reproduce, audit, or trust. We present OntoKG-EQ, a knowledge-based system that makes such queries reproducible, evidence-linked, temporally explicit, valid, and inspectable. It couples a bounded, competency-question-governed core ontology with a provenance-aware knowledge graph in which every class, property, shape, and metric is justified by one of five frozen questions. The system materialises market data into the graph, computes the metrics, validates its structure against declarative shape constraints, answers each competency question with a graph query, derives typed findings, and generates an explanation tracing each result to its observations, evidence, sources, and provenance. We evaluate on curated datasets from three emerging markets (Pakistan, Malaysia, Indonesia). Once each market's data is mapped into the common schema, the ontology, shapes, queries, and rules are reused unchanged. A relational-database baseline shows the graph changes no analytics. Its value is governance, provenance, and self-explaining structure. Because answers are rendered deterministically from the validated graph, their consistency with it is guaranteed by construction. Used as a reference, the system measures how consistently eight open language models transcribe the same evidence (provenance coverage 0.00 to 1.00). A study with a 17-participant convenience panel finds the evidence bundle significantly increased perceived trust and completeness. Code and data are openly released.
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https://arxiv.org/abs/2609.08869
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Evidence-Grounded Retrieval for Investigation Hunt Lead Generation from CTI Reports
2026-09-08 14:21:35Akash Prakash, Boubakr Nour, Makan Pourzandi, Chadi Assi, Mourad DebbabiAbstract
Threat hunting increasingly depends on converting unstructured knowledge (e.g., Cyber Threat Intelligence reports) into actionable hunt leads: concise, investigable hypotheses grounded in observable artifacts and adversary techniques. Producing such leads manually is a tedious and hard-to-scale task. Existing automated approaches stop at the entity layer, ignore the defender's operational environment, and analyze each report in isolation. To address these gaps, we introduce AHLERT, a system that automatically extracts relevant, environment-aware, and hunt leads from threat reports through (i) a hybrid retriever that combines dense vector search with multi-hop traversal over a knowledge graph seeded with MITRE ATT&CK; (ii) an ontology-grounding retrieval-augmented generation method that constrains each lead to the defender's own assets and controls; and (iii) an LLM-agnostic framework that emits structured, directly actionable leads rather than loose indicators of compromise. We evaluate AHLERT on public CTI reports for well-known APTs across multiple proprietary and open-weight models. Hybrid evidence retrieval with ontology grounding raises mean F1 by ~2x (0.44 to 0.85) over a single-route flat-RAG baseline, and AHLERT attains the highest effectiveness score (~86.95%) compared with off-the-shelf LLM models.
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https://arxiv.org/abs/2609.08790
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OntologyBench: Can Dense Retrieval Satisfy Structured Biomedical Constraints?
2026-09-08 03:04:36Xiao Yu Cindy Zhang, Wyeth Wasserman, Jian ZhuAbstract
We introduce OntologyBench, a tiered biomedical retrieval benchmark comprising 471,854 training and 125,744 evaluation query-document relevance pairs across concept grounding, relational retrieval, and compositional phenotype-based retrieval. Although these tasks can be tractable using ontology-aware reference methods, across task tiers, embedding performance is generally lower on relational and compositional tasks than on concept-grounding tasks. Fine-tuning on ontology-derived supervision improves performance on several relational and compositional tasks, whereas the evaluated reranking and LLM-based candidate-scoring methods provide little or no end-to-end improvement. Errors frequently reflect diseases matching only subsets of the phenotype evidence. These findings indicate that the evaluated embedding and reranking configurations do not reliably recover the compatibility encoded by the selected ontology relations and phenotype combinations and motivate retrieval systems that better integrate learned representations with structured biomedical knowledge.
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https://arxiv.org/abs/2609.08174
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Large Language Models for HVAC Operations in Building Energy Systems: A Critical Review of Methods, Applications, and Deployment Readiness
2026-09-04 16:08:05Alexander Neubauer, Tianzhen Hong, Han Li, Mengbo Yu, Amin Darbandi, Yannick F\"urst, Martin KriegelAbstract
Building automation systems generate rich sensor data yet remain insight-poor because heterogeneous point naming, missing metadata, and fragmented documentation obstruct their operational use. This systematic review analyses and codes 66 peer-reviewed studies on large language models (LLMs) for HVAC operations published between 2023 and March 2026. Each study is classified across five application families and three LLM method families and assessed for evidence realism, deployment readiness, and the responsibility boundary between the LLM and physical HVAC decisions. The corpus is concentrated in building energy modelling (BEM, 32 of 66 papers), while load forecasting remains too sparse for subfield-level conclusions. Only four studies reach pilot-level evidence, and none reports sustained operational deployment. No study was classified as ready-now for industry adoption; three were near-term and 63 research-only. Nevertheless, several bounded, human-in-the-loop uses merit near-term trials, including point-name normalisation, document-grounded operator support, BEM workflow assistance, and advisory interfaces around physics-based controllers. Conventional machine learning (ML), model predictive control (MPC), reinforcement learning (RL) and ontology-based tools remain more adopted for high-frequency control, short-horizon numerical forecasting, and well-posed ontology mapping, while autonomous agentic operation and unvalidated occupant proxies remain research-stage. Current evidence therefore supports LLMs primarily as semantic and workflow layers rather than autonomous HVAC controllers. Future work should prioritise field-validated benchmarks, orchestration evaluation under operational constraints, and LLM-MPC/RL architectures with bounded latency and verifiable safety properties.
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https://arxiv.org/abs/2609.05314
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NS-ST-GraphRAG: Neuro-Symbolic Spatio-Temporal GraphRAG for Literary Knowledge Processing
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Long-form literary narratives pose a distinctive information-processing challenge for retrieval-augmented generation: relevant evidence is distributed across chapters, relations evolve over narrative time, and correct answers may depend jointly on temporal, spatial, and relational constraints. We propose NS-ST-GraphRAG, a neuro-symbolic spatio-temporal GraphRAG framework that integrates ontology-guided extraction, deterministic constraint checking, dual temporal coordinates, spatial scene attributes, and dynamic sub-graph retrieval. Instead of retrieving from a single corpus-level graph, the framework selects the graph state valid for the temporal and spatial scope of a query and grounds generated answers in traceable evidence. We further introduce Red-Chamber-QA, to our knowledge the first open multi-hop question-answering benchmark for classical Chinese literature, with time-, space-, and general-question categories, per-part evidence spans, and deterministic shortcut controls. On a 120-question held-out split, NS-ST-GraphRAG achieves mechanical answer reproduction of 0.733 versus 0.675 for the frozen window baseline and 0.083 for a closed-book model (McNemar exact p = 0.092, directionally favorable but not significant); semantic-judge accuracy is 0.866 versus 0.850. The pre-specified constrained-category condition of H2 is not supported by the delivered comparison. These results show how temporal graph representation, constrained extraction, and auditable evaluation integrate into a unified framework for verifiable knowledge processing over long-form narrative.
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https://arxiv.org/abs/2609.05139
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Corporate Language Model : Transforming Tacit and Fragmented Enterprise Knowledge into a Sovereign, Auditable, and Executable Corporate Intelligence Layer
2026-09-03 18:39:07Fabricio C. Avini, Guilherme TrezAbstract
Enterprise AI deployments fail not from model inadequacy, but because organizations lack a structured substrate encoding how they decide, negotiate, and execute. Generic LLMs carry no firm-specific ontological priors; RAG remains brittle, with no path to executable action; static playbooks encode logic but cannot reason or adapt. This demands an architecture treating tacit-knowledge capture, ontological grounding, sovereign deployment, and auditable actuation as co-designed from the start. This paper introduces the Corporate Language Model (CLM), a framework transforming a firm's structured, unstructured, multimodal, and tacit knowledge into an ontology-grounded enterprise foundation upon which reasoning and governed execution are composed. CLM has five capability planes and four architectural pillars: a Neurosymbolic Mesh coupling generative models with a knowledge graph; a Skill Graph where reusable tactics, personas, objections, and goals are typed and composed; Living Digital Twins modeling functional areas as reasoning surrogates; and a Deep Security Layer enforcing sovereignty, traceability, and human oversight. A Spec-as-Code paradigm bridges grounded intent and executable artifact. CLM is one instantiation of this foundation-centric class. Four contributions follow: CLM is defined as a distinct object of study; the Skill Graph is introduced for compositional explainability by construction; the Wisdom Listener effect is proposed, whereby tacit-capable foundations compound in value with use, connecting to dynamic capabilities and organizational learning; and evidence from a JCI-accredited tertiary hospital in Brazil instantiates three of the six maturity stages under LGPD.
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https://arxiv.org/abs/2609.04377
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A hybrid pipeline for dynamic ontology-based semantic mapping
2026-09-03 14:11:21Konstantinos Dimitropoulos, Ioannis HatzilygeroudisAbstract
Semantic mapping plays a crucial role in the ability of a robot to interact with objects, operate and navigate a complex environment. The most common pipeline for semantic mapping consists of geometric mapping and localization (SLAM), perception, semantic fusion and semantic representation. However, more recent works also integrate a form of prior knowledge in their application, most notably knowledge graphs or semantic scene graphs, to improve contextual understanding of the environment. In this paper, we present a hybrid pipeline for semantic mapping. Our system incorporates an external calibrated camera using homography projection for geometric mapping and localization, combined with object detection, persistent object tracking and ontology driven semantic updates to build a dynamic semantic world model. Linear regression models are also used for correction of the estimated values of real world coordinates. The system continuously updates object instances, spatial properties and semantic relations based on real time sensory data. Ontologies are selected as form of knowledge representation due to their hierarchical structure, semantic expressiveness and support for dynamic world modelling.
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https://arxiv.org/abs/2609.03891
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Learning to Fuse LLMs with Ontology Rankers for Rare-Disease Diagnosis
2026-09-02 11:44:21Zhaoyang Jiang, Zhizhong Fu, Yunsoo Kim, Zicheng Li, Xuanqi Peng, Fei Teng, Jiacong Mi, Honghan WuAbstract
Ontology rankers remain useful for rare-disease diagnosis because each candidate can be traced to matched patient phenotypes. Large language models (LLMs) can generate differential diagnoses from the same patient description, but their predictions lack an equally clear evidence trail. Rather than asking which system should replace the other, we ask whether an LLM can improve the ranker without giving up its evidence. Our behavior-based fusion model examines the two ranked lists, their agreement, and the ontology support behind each candidate, and learns how much to rely on each system for the individual case. Before comparison, we remove a documented test-set leakage pathway caused by benchmark cases and ontology annotations being derived from the same publications. Across eight open LLMs, fusion improves Phenomizer Recall@1 by 7.86 percentage points on Phenopacket Store and 20.18 points on RAMEDIS. When paired with DeepSeek-V4-Flash through an API, a fusion model trained only on the other LLMs improves Recall@1 from 0.1657 to 0.2176, a 5.19-point gain, without retraining. For 90.8% of correct fused diagnoses, the disease retains candidate-level ontology evidence that can be inspected. These results show that LLMs can strengthen an established diagnostic tool without discarding the structured evidence that makes it useful.
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https://arxiv.org/abs/2609.02473
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Towards a Foundational Ontology for Identifying and Resolving Contradictions in Dialogue-based Human-Robot Interactions
2026-09-02 09:35:02Maitreyee Tewari, Michele PersianiAbstract
Existing Human-Robot Interaction (HRI) literature has focused on identifying and structuring errors, failures, conflicts, and knowledge issues (called in this work as contradictions) in domain-specific dialogue-based interactions. However, there is still lack of a formal computational framework to represent and define these contradictions, interoperable and usable across HRI and human-agent interaction (HAI) domains. Thus, this research project aims to capture, represent, and evaluate the notion of (1) dialogue-based collaborative interaction and (2) related contradictions in a foundational ontology. METHONTOLOGY, a systematic approach to build domain-independent ontologies was applied. In the conceptualisation stage of the presented ontology, concepts and models from Activity Theory were used. Preliminary results presented in this short article are: (i) Natural language definitions of dialogues and related contradictions in HRI, (ii) Set Theoretic definitions of dialogues and contradictions, and (iii) First Order Logic (FoL) formulation of the contradiction concepts and three novel principles guiding dialogue-based interactions between humans and robots. In summary, we report on ongoing work to develop a foundational ontology based on Activity Theory called Activity Theory-based foundational ontology (ATFOt) to capture and represent the notion of contradictions in HRI.
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https://arxiv.org/abs/2609.02364
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