Relation_Extraction
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OntoLearner: A Modular Python Library for Ontology Learning with Large Language Models
2026-07-02 10:09:03Hamed Babaei Giglou, Jennifer D'Souza, Andrei Aioanei, Nandana Mihindukulasooriya, S\"oren AuerAbstract
Ontology learning (OL) aims to automatically construct structured knowledge models from text, yet progress remains fragmented across methods, domains, and evaluation practices. Despite decades of research, OL lacks a shared infrastructure for systematic evaluation and ontology access. This absence has hindered progress and fragmented research, leaving the central challenges of OL largely unaddressed. We introduce OntoLearner, a modular, cross-domain, and first-of-its-kind framework that unifies ontology access, large language model (LLM)-driven learning pipelines, and standardized benchmarking. OntoLearner releases 180 machine-readable ontologies spanning 22 domains and provides pipeline-ready datasets with train/dev/test splits for three core OL tasks: term typing, taxonomy discovery, and non-taxonomic relation extraction. Using this infrastructure, we conduct a large-scale empirical study of OL, evaluating 22 retrieval models and 12 LLMs across domains and tasks. The results converge on a finding that reframes the central challenge of OL: failure modes scale with ontological complexity rather than model size or architectural sophistication. The primary bottleneck is not model capability, but a structural mismatch between how models encode knowledge and how ontologies organize it. These findings establish that effective OL is reachable through the cross-domain, multi-task benchmarking enabled by OntoLearner. OntoLearner is open-source (MIT license) at this https URL.
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https://arxiv.org/abs/2607.01977
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RuleChef: Grounding LLM Task Knowledge in Human-Editable Rules
2026-07-01 13:09:49\'Ad\'am Kov\'acs, Nadia Verdha, G\'abor RecskiAbstract
We present RuleChef, a framework that uses large language models (LLMs) to generate executable rules for NLP tasks such as text classification, Named Entity Recognition (NER), or relation extraction. Rules are generated based on a task description and a set of labeled examples, then they are iteratively improved based both on additional examples and on human feedback overexisting rules. RuleChef can also be used to bootstrap rules using the observed input-output pairs from any existing model for a given task. LLMs are used only at learning time, synthesizing rules and iteratively patching them based on failures measured on a held-out split. The result of this process is a fast, deterministic, and inspectable rule system. Preliminary evaluation is performed on both classification and NER tasks. We release RuleChef as open-source software under an Apache 2.0
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https://arxiv.org/abs/2607.01293
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Cross-lingual Relation Extraction with Large Language Models: Zero-Shot, Few-Shot, and Fine-Tuned Evaluation on Romanian
2026-06-30 14:22:46Dragos-Mitrut Vasile, Elena-Simona Apostol, Stefan-Adrian Toma, Adrian Paschke, Ciprian-Octavian TruicaAbstract
Relation extraction (RE) for low-resource languages is typically constrained by the lack of annotated corpora. We investigate the feasibility of cross-lingual RE for Romanian by combining automatic dataset translation with large language model (LLM) inference. We translate the SemEval-2010 Task 8 benchmark from English to Romanian using an LLM-based translation pipeline and evaluate Gemma 4 31B under zero-shot, few-shot, and QLoRA fine-tuned configurations, against four encoder baselines spanning 125M to 560M parameters: XLM- RoBERTa (base and large), Romanian BERT, and RoBERT- large. We assess two task formulations: relation classification with marked entities and end-to-end extraction. Our results show that Romanian incurs a 3 to 5 percentage point (pp) drop relative to English in prompt-only settings, that few-shot prompting provides marginal gains over zero-shot, and that QLoRA fine-tuning improves macro F1-Score by more than 22 percentage points in both languages while reducing the cross-lingual gap from 3.3 to 1.4pp. The encoder baselines come within 1-4pp of QLoRA Gemma on Romanian despite being 50-250 times smaller, with monolingual Romanian BERT at 125M parameters matching multilingual XLM-R at 278M. The case for using a 31B model for single-task RE on Romanian is therefore weak in deployment scenarios where compute matters. We release the translated dataset, evaluation code, and trained models.
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https://arxiv.org/abs/2606.31718
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CVE-TTP KG: Knowledge Graph Linking Software Vulnerabilities to Attack Behaviors
2026-06-30 12:14:22Basant Agarwal, Dincy R. Arikkat, Swati Yadav, Serena Nicolazzo, Antonino Nocera, Vinod PAbstract
In the evolving threat landscape, adversaries exploit software vulnerabilities to launch sophisticated attacks, challenging traditional defenses. Although databases like CVE and NVD provide detailed technical information, they often lack links to attacker behaviors such as tactics and techniques, limiting effective threat interpretation and response. This work bridges this gap by connecting vulnerabilities with behavioral patterns from the MITRE ATT&CK framework. We construct a CVE-TTP Knowledge Graph that links CVEs to tactics and techniques using classification and relation extraction. Transformer-based models are developed for behavior identification, with CySecBERT achieving macro F1-scores of 87.71% (techniques) and 96.16% (tactics). Also, we created an annotated dataset with 24,820 entities and 43,608 relations for entity and relation extraction. The pipeline-based approach achieves macro F1-scores of 0.86 (entity extraction) and 0.99 (relation extraction), while a span-based joint model achieves 0.78. These outputs are integrated into a Neo4j-based Cyber Threat Knowledge Graph, enabling structured visualization of vulnerabilities.
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https://arxiv.org/abs/2606.31557
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Two-Stage Prompt Optimization for Few-Shot Relation Extraction: From Reasoning-Guided Search to Gradient-Guided Refinement
2026-06-28 23:12:28Aunabil Chakma, Mihai Surdeanu, Eduardo BlancoAbstract
Automatic prompt optimization is still underexplored for episodic few-shot relation extraction with smaller language models. We propose a two-stage framework that combines reasoning-based prompt optimization with gradient-based prompt optimization. The first stage can use any reasoning-based optimizer to make broadprompt improvements in natural language. The second stage applies our GradPO, which uses loss and gradient signals to identify high-impact prompt spans and refine them with local edits. Experiments on FS-TACRED and FS-FewRel show that local refinement usually improves prompts found by the first stage, and GradPO is the most consistent refiner. Our framework achieves state-of-the-art performance on FS-TACRED with Qwen3-4B and remains competitive on FS-FewRel.
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https://arxiv.org/abs/2606.29639
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LC-ICL: Label-Guided Contrastive In-Context Learning for Robust Information Extraction
2026-06-28 14:01:52Xiao You, Tianwei Yan, Shan ZhaoAbstract
There has been increasing interest in exploring the capabilities of advanced large language models (LLMs) in the field of information extraction (IE), specifically focusing on tasks related to named entity recognition (NER) and relation extraction (RE).Although researchers are exploring the use of few-shot information extraction through in-context learning with LLMs, they tend to focus only on using correct or positive examples for demonstration, neglecting the potential value of incorporating incorrect or negative examples into the learning this http URL this paper, we present LC-ICL a novel few-shot technique that leverages both correct and incorrect sample constructions to create in-context learning demonstrations. This approach enhances the ability of LLMs to extract entities and relations by combining positive samples with negative samples annotated by error-cause labels. These labels expose more detailed error features in erroneous examples, enabling the model to understand why similar predictions fail and avoid repeating such errors during this http URL, our proposed method taps into the inherent contextual information and valuable information in hard negative samples and the nearest positive neighbors to the test and then applies the in-context learning demonstrations based on LLMs. Our experiments on various datasets indicate that LC-ICL outperforms previous few-shot in-context learning methods, delivering substantial enhancements in performance across a broad spectrum of related tasks. These improvements are noteworthy, showcasing the versatility of our approach in diverse scenarios.
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https://arxiv.org/abs/2606.29407
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DistilledGemma: Balanced Efficiency-Accuracy for Person-Place Relation Extraction from Multilingual Historical Articles
2026-06-28 00:38:45Youssef Aboelwafa, Ahmed Samir, Nagwa Elmakky, Marwan TorkiAbstract
We present DistilledGemma, an efficient and accurate system for the HIPE-2026 shared task on person-place relation extraction from multilingual historical newspaper articles in English, German, and French. Our approach adopts a three-stage knowledge distillation pipeline designed to balance classification accuracy with computational efficiency. In the first stage, we systematically explored prompt engineering strategies across eight large language models to identify the most effective reasoning architecture for this challenging task. In the second stage, we applied supervised fine-tuning (SFT) via QLoRA to a Gemma 4 26B A4B teacher model, leveraging its strong multilingual capabilities to generate silver-standard chain-of-thought traces across the training corpus. In the final stage, we performed response-level distillation to transfer these learned reasoning patterns into a compact Gemma 4 E2B student model. In the official evaluation, our team WHEREAMI ranked 3rd on the standard test set with an accuracy profile mean score of 0.688, and 2nd on the binary test set with a mean score of 0.8156. Notably, by distilling knowledge from the 26B teacher to the 2.3B student, we preserved strong reasoning capabilities while reducing the deployed model size to approximately 2.3B effective parameters; the LoRA adapters used during training were merged into the student for inference. This configuration ranked 2nd in the balanced efficiency-accuracy profile across both the standard and binary test sets. These results demonstrate that knowledge distillation provides a practical and scalable solution for historical document processing, achieving competitive performance without excessive computational cost.
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https://arxiv.org/abs/2606.29130
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Mapping Political-Elite Networks in Europe with a Multilingual Joint Entity-Relation Extraction Pipeline
2026-06-25 17:51:59Kirill Solovev, Jana LasserAbstract
Whether political elites organise into rent-seeking coalitions that capture public resources or civic networks that sustain governance is a central question in comparative politics. Yet observing these complex, informal, and adversarial ties at scale has historically required intensive manual coding, while automated text-as-data methods have largely been limited to simple co-occurrence. Recent large language model (LLM) approaches offer a path forward but often rely on proprietary APIs, lack cross-lingual capability, and struggle with scalable entity resolution. We present a modular, fully open-weight pipeline for multilingual joint entity-relation extraction that builds signed, temporal knowledge graphs from massive unstructured news corpora. It combines span-based named-entity recognition (NER) with a three-stage linking cascade mapping mentions to language-independent Wikidata identifiers; a high-throughput, ontology-constrained mixture-of-experts model then uses guided decoding to extract directed, signed relationships grounded in a domain ontology. A full-coverage spot-check against a 3491-relation gold standard shows high textual correctness (68.2% strict to 93.7% lenient). Two large-scale case studies validate the pipeline against the public record. In Austria, it reconstructs a political party's complete lifecycle, dating internal fractures and tracking personnel into successor factions and court convictions. In a Polish corpus, it uncovers the overlapping economic and governance networks of state-enterprise patronage, alongside the structurally balanced, signed conflict network of the polarized Civic Platform (Platforma Obywatelska, PO)--Law and Justice (Prawo i SprawiedliwoÅÄ, PiS) duopoly. By bridging raw multilingual text and structured relational data, our framework provides a robust, replicable foundation for cross-national empirical computational social science.
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https://arxiv.org/abs/2606.27347
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ReaORE: Reasoning-Guided Progressive Open Relation Extraction Empowered by Large Reasoning Models
2026-06-25 12:59:53Xin Lin, Liang Zhang, Guoqi Ma, Hongyao Tu, Jinsong SuAbstract
Open Relation Extraction (OpenRE) requires a model to extract unseen relations between head and tail entities from unstructured text for real-world applications. The core challenge of OpenRE lies in achieving reliable generalization to unseen relation types. Current OpenRE approaches either employ clustering techniques, which cannot generate relation labels and suffer from poor generalization, or rely on direct relation label generation via Large Language Models (LLMs), which lack sufficient discriminative capacity to distinguish easily confused relations. To address these limitations, we propose Reasoning-guided progressive OpenRE (ReaORE), a framework for performing relation extraction through coarse-to-fine relation reasoning. Specifically, ReaORE consists of two key stages: (i) relation filtering, which reasons over multiple aspects to understand relations and instances, yielding an initial relation set, and further supplements and filters relations via embedding-based similarity to ensure the target relation is included; (ii) relation prediction, which aims to predict the target relations from the above set via fine-grained comparative reasoning to better distinguish easily confused relations. Extensive experiments on two widely used OpenRE datasets demonstrate that ReaORE outperforms existing baselines.
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https://arxiv.org/abs/2606.26986
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Overview of HIPE-2026: Person-Place Relation Extraction from Multilingual Historical Texts
2026-06-24 15:09:12Juri Opitz, Maud Ehrmann, Corina Racl\'e, Andrianos Michail, Matteo Romanello, Simon ClematideAbstract
Was this person ever at that place, and if so, when? Answering such questions from noisy, multilingual historical documents is the central challenge of HIPE-2026, the third edition of the HIPE evaluation series. Moving from named entity recognition and linking (HIPE-2020, HIPE-2022) to reasoning about relationships between entities, HIPE-2026 targets two temporally grounded relation types: $at$, indicating that a person was present at a location at some point prior to a document's publication date, and $isAt$, indicating presence contemporaneous with that date. This paper presents the results of the evaluation campaign, which confronted 17 participating teams with the challenges of historical language variation, OCR noise, and indirect contextual cues across three languages: French, German, and English. The datasets include historical newspaper text from the nineteenth and twentieth centuries, as well as a surprise-domain generalization set drawn from early modern French literary texts. A distinctive feature of HIPE-2026 is its three-fold evaluation framework, which assesses predictive accuracy, computational efficiency, and cross-domain generalization, reflecting the practical demands of large-scale historical document processing in the cultural heritage domain. Across more than 40 submitted runs, results reveal a wide range of strategies, from state-of-the-art large language models to lightweight task-specific classifiers, and highlight the trade-offs between accuracy, efficiency, and robustness inherent to historical relation extraction at corpus scale. System descriptions, datasets, and findings are presented and discussed, offering a detailed picture of the current state of temporally grounded relation extraction for historical documents.
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https://arxiv.org/abs/2606.25935
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IHUBERT: Vector-Based Semantic Deduplication and Domain-Balanced Pretraining for Persian Resources
2026-06-18 11:10:22Arash Ghafouri, Mahdi Firouzmandi, Hossein Saberi, Mohammad Reza Hasani AhangarAbstract
Persian pretrained language models (PLMs) are still limited by the scarcity of large-scale, high-quality pretraining corpora and by insufficient evaluation beyond standard classification and NER tasks. We present IHUBERT, a monolingual Persian PLM trained from scratch with the RoBERTa-base encoder (125M parameters) on a 45 GB curated subset of the Sepahr-Danesh collection (about 7-8B tokens). To improve corpus quality and reduce redundancy, we employ a multi-stage preprocessing pipeline that includes normalization, exact and near-duplicate removal, anonymization, and vector-database-based semantic deduplication for distribution balancing control across domains and registers. We additionally train a 139k-vocabulary BPE tokenizer on the full pretraining corpus to better capture Persian morphology and orthographic variation. IHUBERT is evaluated on seven Persian NLU benchmarks covering NER, sentiment analysis, topic classification, NLI, extractive question answering, and relation extraction, using task-standard metrics (entity-level F1, Macro-F1, EM/F1). IHUBERT achieves its strongest gains on extractive QA, ranking first on both PQuAD (F1 88.3542) and ParsiNLU-RC (F1 49.0987), and attains the best result on FarsTail (Macro-F1 0.8350). On NER and topic classification, it remains competitive (e.g., 0.8308 F1 on ParsTwiNER; 0.7953 Macro-F1 on DigiMag), while relation extraction remains the main remaining gap (0.6684 Macro-F1 on PERLEX). A controlled tokenizer ablation on the IHUBERT pretraining corpus shows that BPE yields slightly lower subword fragmentation than WordPiece at matched vocabulary size, supporting our tokenization design. Overall, IHUBERT advances Persian language modeling through semantically curated large-scale pretraining and broad evaluation across both classification and comprehension-oriented tasks.
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https://arxiv.org/abs/2606.20089
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Prompt, Plan, Extract: Zero-Shot Agentic LLMs Workflows for Lung Pathology Extraction from Clinical Narratives
2026-06-18 07:00:43Aman Pathak, Cheng Peng, Mengxian Lyu, Ziyi Chen, Reema Solan, Sankalp Talankar, Yasir Khan, Hiren Mehta, Aokun Chen, Yi Guo, Yonghui WuAbstract
Information extraction from pathology reports is essential for cancer staging, tumor registry population. Yet key data remains embedded in narrative reports, making manual extraction labor-intensive and error-prone. Traditional supervised Natural Language Processing pipelines address this through fully supervised Named Entity Recognition and Relation Extraction, but require expensive manual annotation and suffer cascading failures when upstream entities are missed. In this study, we developed a zero-shot, agentic workflow, and evaluated five open-source generative Large Language Models (LLMs) to populate 13 College of American Pathologists synoptic fields from lung resection pathology reports. We compared them against a state-of-the-art supervised GatorTron NER-RE baseline using a novel, registry-aligned evaluation framework. The baseline achieved Micro-F1of 0.960, while the best zero-shot model (GPT-OSS-20B) achieved Micro-F1 of 0.893 (recall: 0.949), accurately extracting complex relations like Pathologic Stage without task-specific training. These results suggest that open-source, zero-shot agentic LLMs are a low-cost solution for extracting lung pathology information.
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https://arxiv.org/abs/2606.19852
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NEST: Narrative Event Structures in Time for Long Video Understanding
2026-06-18 02:05:14Ali Asgarov, Kaushik Narasimhan, Najibul Haque Sarker, Hani Alomari, Chia-Wei Tang, Anushka Sivakumar, Zaber Ibn Abdul Hakim, Shaurya Mallampati, Chris ThomasAbstract
Recent progress in vision-language models has enabled the processing of increasingly long video sequences, but the ability to handle extended token streams does not translate to understanding of narrative structure in long videos. Existing long video benchmarks focus on needle-in-a-haystack retrieval rather than evaluating how low-level actions form events, how events interact across time, and how narratives progress, for example, whether a model can connect an early setback, such as a job loss to a later relationship breakup, despite long gaps, intervening scenes, or flashbacks that reframe what occurred. We introduce NEST (Narrative Event Structures in Time for Long Video Understanding), a dataset of 1005 full-length movies (avg. 98 minutes), each annotated with 102 multimodal narrative events grounded in visual content, dialogue, and audio. NEST captures multimodal narrative events with structured annotations grounded in visual content, dialogue, and audio, and links them through relations that reflect narrative structure, including temporal ordering, hierarchical composition, and long-range dependencies. We introduce baselines for event trigger detection (ETD), event localization (EL), event argument extraction (EAE), and event relation extraction (ERE). The benchmark is highly challenging for grounded event discovery, with ETD below 8%, EL under 6%, and EAE below 11%. In contrast, ERE is more tractable once events are given, reaching 35.45% F1 zero-shot and 44.42% F1 after fine-tuning.
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https://arxiv.org/abs/2606.19706
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SAMA: Semantic Anchor-aligned Augmentation for Unified Low-Resource Multimodal Information Extraction
2026-06-17 07:43:33Quanjiang Guo, Chong Mu, Jiazhou Pan, Ming Jia, Ling Tian, Hui Gao, Zhao KangAbstract
Multimodal Information Extraction (MIE)-covering tasks such as Multimodal Named Entity Recognition (MNER), Relation Extraction (MRE), and Event Extraction (MEE)-is essential for understanding multimedia content but remains constrained by severe data scarcity. Although data augmentation is a promising remedy, existing approaches are impeded by coarse cross-modal alignment and fragmented, task-specific designs that fail to exploit shared semantic knowledge. To overcome these limitations, we introduce Semantic Anchor-aligned Multimodal Augmentation (SAMA), a unified framework for generating high-fidelity, task-aware synthetic data. SAMA constructs structured semantic anchors from ground-truth labels to guide a Collaborative Multi-Experts Multimodal Large Language Model (CME-MLLM), which integrates a Universal Adapter for shared semantics with Task-Specific Adapters to produce diverse yet constraint-compliant textual samples. For image synthesis, SAMA employs an Anchor-Preserving Diffusion mechanism that uses anchor-weighted prompts and latent conditioning to maintain critical semantic anchors while diversifying visual contexts. To eliminate the need for manual verification, SAMA further introduces a Dual-Constraint Filtering module that selects synthetic samples based on both cross-modal consistency and anchor fidelity. Extensive experiments across benchmark datasets for MNER, MRE, and MEE demonstrate that SAMA consistently outperforms state-of-the-art augmentation baselines under both fully supervised and low-resource settings, underscoring its versatility, robustness, and effectiveness.
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https://arxiv.org/abs/2606.18780
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Few-Shot Biomedical Relation Extraction with Large Language Models: A Viable Alternative to Supervised Learning?
2026-06-13 17:37:50Jakob Mraz, Toma\v{z} Curk, Bla\v{z} ZupanAbstract
Biomedical relation extraction (BioRE) is a key step in transforming biomedical literature into structured knowledge. However, most existing approaches rely on supervised models trained on costly annotated datasets, limiting their scalability and adaptability across relation types and domains. We investigate few-shot BioRE using prompt-based learning with large language models (LLMs) and compare two task formulations: pairwise classification, which predicts relations for individual entity pairs, and joint generation, which extracts multiple relations in a single model call. Experiments on the BioREDirect dataset reveal a clear precision-recall trade-off. Pairwise classification achieves higher recall, whereas joint generation is more precise and computationally efficient. The best-performing model achieves a micro-F1 score of 0.44, substantially outperforming previous few-shot results (0.34) while remaining below the supervised baseline (0.56). Much of this gap is attributable to a single ambiguously defined relation type. When evaluated using macro-F1, which better captures performance across relation types in an imbalanced setting, prompt-based approaches outperform the supervised baseline (0.45 vs. 0.38), particularly on rare relation types. These findings highlight the potential of LLMs for BioRE in low-resource settings and underscore the importance of well-defined relation schemas.
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https://arxiv.org/abs/2606.15412
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Knowledge Graph Enhanced Memory-Augmented Retrieval for Long Context Modeling
2026-06-12 02:48:45Ghadir Alselwi, Basem Suleiman, Hao Xue, Shoaib Jameel, Hakim Hacid, Flora D. Salim, Imran RazzakAbstract
Long-context language modeling requires not only extending context windows but maintaining coherent understanding of entity states and relationships across thousands of tokens -- a challenge that semantic similarity alone cannot address. KGERMAR addresses this by constructing dynamic, context-specific knowledge graphs from input text during inference, enabling domain-adaptive retrieval that leverages both semantic similarity and explicit entity relationships. The framework performs real-time entity and relation extraction to build contextual knowledge graphs, then integrates graph-structural embeddings with textual semantics through a multi-component memory architecture. Three memory banks -- contextual, semantic, and structural -- are maintained with retrieval signals fused via learned weights to capture both surface-level semantics and deeper relational patterns. Evaluated on SlimPajama (84.7K training examples), WikiText-103 (4,358 examples), PG-19 (100 examples), and Proof-pile (46.3K examples), KGERMAR achieves up to 8.5\% lower perplexity and 2--2.5x better memory efficiency than memory-augmented baselines across context lengths from 1K to 32K tokens, with superior in-context learning performance across five NLU tasks. The dynamic knowledge graph construction approach advances memory-augmented language modeling by enabling domain-specific knowledge representation that adapts to input contexts rather than relying on fixed knowledge bases.
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https://arxiv.org/abs/2606.14047
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EvoPool: Evolutionary Programmatic Annotation for Label-Efficient Specialized Supervision
2026-06-01 03:10:37Tianyi Xu, Yaolun Zhang, Xuan Ouyang, Huazheng WangAbstract
Large language models excel at general tasks but underperform smaller supervised models in specialized, high-stakes domains where training labels are costly. We address this regime with EvoPool, an evolutionary multi-agent framework inspired by Darwinian evolution. Three specialized agents iteratively propose executable annotator code, a small validation set provides a fitness signal, and a deterministic gate keeps only annotators that pass viability, diversity, and marginal-contribution checks across generations. Pool votes are mapped to soft training labels by EvoAgg, a text-aware aggregator combining semantic features with annotator-vote features. The authored pool runs at near-zero per-example cost and is 4500 to 31000x faster than LLM annotation on 100K examples. Across 7 of 8 LLM-weak specialized and complex tasks spanning biomedical relation extraction, legal-clause classification, complex reasoning, and dense multi-label biomedical classification, EvoPool beats the strongest LLM annotation baseline by an average +0.141 macro-F1, peaking at +0.301 on ChemProt and +0.265 on PubMed. Code is available at: this https URL
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https://arxiv.org/abs/2606.01617
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PubMedCausal: A Span-Level Annotated Corpus for Causal Relation Extraction in Biomedical Text
2026-05-27 11:59:17Ifeoluwa Kunle-John, Josiah Paul, Oluwatosin Agbaakin, Peter Aina, Ikenna Odezuligbo, Sydney AnuyahAbstract
Causal relation extraction (CRE) is central to biomedical text mining, but current resources often conflate causal relations with broader associations, restrict annotation to sentence-level examples, or focus mainly on explicit causal cues. This limits their usefulness for evaluating whether models can recover causal claims as they are actually expressed in biomedical text. We introduce PubMedCausal, a span-level annotated corpus for biomedical CRE built from PubMed abstracts. The corpus contains 30,000 paragraph-level rows, including 3,945 causal rows and 6,491 adjudicated cause--effect pairs. Each causal relation is annotated with full-text cause and effect spans, causality type, and sententiality, enabling evaluation of both causal detection and full-span causal extraction. We benchmark discriminative encoders and open-source generative models across detection and extraction settings. For causal detection, biomedical encoders are strongest, with PubMedBERT reaching an F$_1$ score of 0.7391. For span-level extraction, the best generative baseline is DeepSeek-R1-32B with few-shot prompting, reaching a Cosine Pair F$_1$ of 0.6765. We further test transfer learning by evaluating PubMedCausal-trained encoders on external causal relation datasets, showing that the resource supports cross-dataset evaluation. Our results show that biomedical CRE remains difficult under class imbalance, long causal spans, implicit causality, inter-sentential relations, and prompt sensitivity. Code and Data can be found here: this https URL
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https://arxiv.org/abs/2605.28363
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SSDAU: Structured Semantic Data Augmentation for Joint Entity and Relation Extraction
2026-05-22 09:52:43Jiawei He, Mengyu Shi, Chunrong FangAbstract
Joint Entity and Relation Extraction (JERE) is highly susceptible to weak generalization due to low-quality training data. Data augmentation is a common strategy to enhance model generalization across different domains. However, existing data augmentation methods often overlook text relevance and may disrupt semantic structures and dependencies, making it difficult to generate effective augmented data for improving model generalization. In this paper, we propose Structured Semantic Data Augmentation (SSDAU), a novel method designed to preserve the semantic structure of text during augmentation. SSDAU segments text based on entity labels and employs an encoder to capture semantic features of entities through context awareness. It then performs entity semantic restructuring to generate augmented data. To distinguish semantically similar entities, SSDAU fuses contextualized embeddings with traditional similarity scores. To mitigate potential topic ambiguity and information loss, we apply the BERTTopic model to filter out irrelevant topics, ensuring topic consistency. We evaluate SSDAU on datasets with different annotation types and compare its performance on five representative JERE models against seven popular data augmentation baselines. Experiments demonstrate that SSDAU generates semantically consistent data with superior robustness against ambiguity (8.26\% F1 decrease vs.\ 31.91\% for baselines), significantly outperforming all existing methods across all metrics.
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https://arxiv.org/abs/2605.23440
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SAVER: Selective As-Needed Vision Evidence for Multimodal Information Extraction
2026-05-20 05:10:18Miaobo Hu, Shuhao Hu, Bokun Wang, Rui Chen, Xin Wang, Xiaobo Guo, Daren Zha, Jun XiaoAbstract
Multimodal IE in social media is difficult because a post may attach multiple images that are weakly related, redundant, or even misleading with respect to the text. In this setting, always-on multimodal fusion wastes computation and can amplify spurious visual cues. The core challenge is to decide, for each candidate span or marked entity pair, whether vision should be consulted at all and, if so, which small subset of images provides trustworthy evidence. We propose SAVER, a selective vision-as-needed framework for multimodal named entity recognition and multimodal relation extraction. SAVER uses a Conformal Groundability Gate (CGG) to estimate span-level visual groundability in MNER, derive pair-level activation in MRE from the two marked entities, and calibrate the activation threshold on a held-out split via a conformal-style procedure with Clopper--Pearson upper bounds. When activated, a submodular relevance--diversity selector chooses a compact evidence subset across images, which is then aggregated by a Set Transformer. An energy-inspired joint scoring head combines text, optional visual evidence, text--image consistency, and sparse routing for entity typing or relation classification. Experiments show that SAVER consistently improves F1 over strong text-only and always-on multimodal baselines, while reducing AURC, increasing activation coverage at a fixed risk level, and lowering FLOPs and P90 latency.
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https://arxiv.org/abs/2605.20713
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