Disentangled representation learning aims to map independent factors of variation to independent representation components. On one hand, purely unsupervised approaches have proven successful on fully disentangled synthetic data, but fail to recover semantic factors from real data without strong inductive biases. On the other hand, supervised approaches are unstable and hard to scale to large attribute sets because they rely on adversarial objectives or auxiliary classifiers. We introduce \textsc{XFactors}, a weakly-supervised VAE framework that disentangles and provides explicit control over a chosen set of factors. Building on the Disentangled Information Bottleneck perspective, we decompose the representation into a residual subspace $\mathcal{S}$ and factor-specific subspaces $\mathcal{T}_1,\ldots,\mathcal{T}_K$ and a residual subspace $\mathcal{S}$. Each target factor is encoded in its assigned $\mathcal{T}_i$ through contrastive supervision: an InfoNCE loss pulls together latents sharing the same factor value and pushes apart mismatched pairs. In parallel, KL regularization imposes a Gaussian structure on both $\mathcal{S}$ and the aggregated factor subspaces, organizing the geometry without additional supervision for non-targeted factors and avoiding adversarial training and classifiers. Across multiple datasets, with constant hyperparameters, \textsc{XFactors} achieves state-of-the-art disentanglement scores and yields consistent qualitative factor alignment in the corresponding subspaces, enabling controlled factor swapping via latent replacement. We further demonstrate that our method scales correctly with increasing latent capacity and evaluate it on the real-world dataset CelebA. Our code is available at \href{this https URL}{this http URL}.
https://arxiv.org/abs/2601.21688
I-JEPA and V-JEPA learn by matching latent predictions to target encoder outputs rather than regenerating the original input, and this has worked well for images and video. We explore whether the same objective works for compact network fingerprints. We built JA4-JEPA, a Transformer-based model trained on JA4, JA4H, JA4S, and JA4X subfields drawn from JA4DB and CIC-IDS- 2017. The training data combines roughly 397K samples from both sources, though no single sample contains all four view families. We evaluated the learned representations with a frozen kNN probe on protocol-family classification across TLS, DNS, and SSH. On 39,416 heldout samples the model achieved a cosine similarity of 0.9899 and a kNN accuracy of 0.9220. These results indicate that JEPA-style predictive learning can produce useful embeddings from JA4-derived fingerprints, even with incomplete view overlap across sources. Keywords: JA4, network fingerprinting, JEPA, predictive representation learning, self-supervised learning
https://arxiv.org/abs/2607.08465
This paper studies the problem of learning a joint distribution from marginal observations, which is inherently ill-posed due to the ambiguity of feasible couplings. We propose LUD-MSR, a latent-variable probabilistic framework that models the joint distribution via auxiliary representations and optimizes evidence lower bounds using only marginal data. Under mild assumptions, we establish an upper bound on the distribution approximation error. This analysis reveals a trade-off in representation learning between domain consistency and information preservation. To address this trade-off, we introduce a Multi-Scale image Representation (MSR) mapping that exploits structural similarity at coarse scales while suppressing domain-specific variations. We show that MSR achieves a more favorable balance of this trade-off compared to existing approaches. Experiments on real-world denoising benchmarks, including cryo-electron microscopy (cryo-EM), demonstrate the effectiveness of the proposed framework.
https://arxiv.org/abs/2607.08198
Whole slide images (WSIs) provide rich diagnostic information for computational pathology, but their gigapixel scale, stain variation, scanner differences, tissue artifacts, and limited expert annotation make robust model training challenging. This paper presents a multi-source Masked Autoencoder (MAE) framework, named ProsMAE, for histopathology representation learning. Tiles from Prostate cANcer graDe Assessment (PANDA), CAncer MEtastases in LYmph nOdes challeNge 2017 (CAMELYON17), and BReAst Carcinoma Subtyping (BRACS) are used for ProsMAE pretraining to expose the encoder to diverse tissue morphology and acquisition conditions. The learned encoder is transferred for International Society of Urological Pathology (ISUP) grade classification through ProsCLS, using a frozen encoder and a linear classification head. ProsMAE achieved a higher mean validation quadratic weighted kappa (QWK) than the vanilla MAE frozen linear-probe baseline under the evaluated disjoint PANDA split. Repeated-split evaluation remains necessary to further establish robustness across split compositions.
https://arxiv.org/abs/2607.08162
The dynamics of communication environments induce significant distribution shifts across domains, challenging the generalization of deep learning-based automatic modulation classification (AMC) models. While existing UDA methods alleviate this problem by aligning source and target features, they give limited consideration to modulation-specific structures that remain informative across domain conditions. In this paper, we consider signal prior knowledge, grounded in communication protocols and physical principles, as a potential way to enhance cross-domain representation learning. Given that different priors may vary in modulation discriminability, domain stability, and complementarity, this paper first analyzes five commonly adopted signal representations that instantiate different signal priors. From them, in-phase/quadrature (IQ), amplitude--phase (AP), and autocorrelation function (ACF) are selected as compact prior-guided inputs. Based on that, a dual knowledge and data-driven network (DKDNet) is proposed for cross-domain AMC. The multi-representation feature encoder (MRFE) and dynamic lightweight fusion unit (DLFU) are designed to achieve unified representation learning and adaptive feature fusion, and the resulting fused features are optimized with modulation classification and adversarial domain alignment objectives. Experiments on both simulated and public datasets validate the rationality of the prior selection and demonstrate the superiority of the proposed method.
https://arxiv.org/abs/2607.08031
Time series classification (TSC) is dominated by a two-stage paradigm: train a feature encoder -- either from scratch on the target dataset or via pretraining on large corpora -- and then fit a task-specific classifier on top. While effective, this decoupling optimizes representation learning independently of the classification objective, requires per-dataset training, and prevents the model from exploiting label information during inference. We introduce TimEE, a 4.5M-parameter foundation model for end-to-end TSC via in-context learning. Given a labeled support set and a query time series, TimEE directly outputs a predicted class distribution in a single forward pass with no per-dataset training required. Following the prior-data fitted network (PFN) framework, TimEE is meta-trained exclusively on synthetic TSC tasks, where each task contains time series with distinct class identities arising from structured distributional shifts in the generative process. Despite seeing no real time series during pre-training, TimEE ranks first in ROC AUC (and third on accuracy) on the UCR benchmark among all compared methods, which include both foundation models and supervised deep learning baselines. To our knowledge, TimEE is the first purely synthetic-pretrained model to reach state-of-the-art performance on the UCR benchmark. These results establish end-to-end ICL with synthetic priors as a compelling, largely unexplored direction for TSC, with scaling, prior design, and richer generation mechanisms as natural avenues for improvement. Code is publicly available at this http URL.
https://arxiv.org/abs/2607.07500
Hypergraph neural networks have shown powerful capability in modeling higher-order relations, yet their predictive uncertainty remains underexplored. Unlike pairwise graphs, uncertainty in hypergraphs arises not only from noisy attributes and ambiguous labels, but also from variations in node-hyperedge incidence structures and complex higher-order dependencies. Existing approaches mainly estimate uncertainty from final predictions or rely on computationally expensive ensembles and Bayesian inference, limiting their ability to capture uncertainty evolution during representation learning. In this paper, we propose Hypergraph Neural Stochastic Diffusion(HyperNSD), a stochastic differential equation framework for uncertainty estimation on hypergraphs. HyperNSD models hypergraph representations as stochastic processes evolving over node-hyperedge incidence structures. A learnable drift function captures deterministic higher-order diffusion dynamics, while a learnable stochastic forcing function characterizes structural ambiguity and representation noise. Predictive uncertainty is directly quantified through the variability of stochastic representation trajectories, providing an intrinsic uncertainty measure beyond post-hoc confidence scores. We formulate HyperNSD with neural drift and diffusion networks, enabling joint learning of prediction and uncertainty propagation. Theoretical analyses establish well posedness, perturbation stability,permutation equivariance, and numerical convergence of the proposed stochastic dynamics. Experiments on multiple hypergraph benchmarks demonstrate that HyperNSD achieves reliable uncertainty estimation for out-of-distribution and misclassification detection while preserving competitive prediction accuracy. These results provide a principled stochastic-dynamical framework for trustworthy higher-order representation learning.
https://arxiv.org/abs/2607.07330
Prompt-free adaptation of the Segment Anything Model (SAM) has emerged as a promising paradigm for automatic medical image segmentation. Existing methods mainly focus on prompt generation, while overlooking that prompt quality is fundamentally constrained by the expressiveness of anatomical representations. However, deterministic prototypes or semantic tokens are insufficient to jointly capture global anatomical priors, intra-structure diversity, and local structural reliability. To address this limitation, we propose the Hierarchical Probabilistic Representation (HPR) framework, which learns complementary anatomical representations through Distributional Anatomical Representation (DAR), Multi-component Anatomical Representation (MAR), and Local Reliability Representation (LRR), and integrates their predictions via Hierarchical Prediction Fusion (HPF) while remaining compatible with the original SAM decoder. Experiments on the Synapse, LA, and PROMISE12 datasets demonstrate that HPR-SAM achieves state-of-the-art performance on Synapse and the best performance under few-shot settings on LA and PROMISE12, validating the effectiveness of the proposed hierarchical probabilistic representation learning framework for prompt-free medical image segmentation. Code is available at this https URL.
https://arxiv.org/abs/2607.06972
X-ray fluorescence (XRF) spectroscopy is a key modality for material analysis in cultural heritage. However, automated learning from XRF spectra remains challenging: XRF spectra are complex one-dimensional signals composed of sharp elemental peaks, broader structures, and background variations that are not taken into account by existing learning-based models. This paper introduces XRFormer, a transformer architecture tailored to XRF spectra through a multiscale convolutional tokenizer that injects locality and multi-resolution inductive biases before global self-attention. The tokenizer progressively reduces spectral resolution while increasing embedding dimensionality, and the resulting token sequence is processed by a standard transformer encoder. We further investigate self-supervised pretraining for XRF representation learning using Masked Spectral modeling (MSM) and a physics-informed Peak Presence Prediction (PPP) objective. Experiments on the Pigments Checker STANDARD v.5 dataset for pigment identification and unmixing show that XRFormer consistently outperforms ViT, SpectralFormer (with and without CAF), and a 1D-CNN baseline for pigment identification. For pigment unmixing, XRFormer achieves robust abundance estimation while maintaining significantly higher parameter efficiency than SpectralFormer, operating at a lower token resolution (128 vs. 512 tokens) and with less than half the number of parameters (1.5M vs. 3.37M). MSM yields consistent gains across both tasks, while PPP further enhances performance for both identification and unmixing when tuned with an appropriate peak prominence. These results highlight multiscale, modality-aware tokenization as an effective and parameter efficient foundation for transformer-based XRF modeling under data-limited conditions. A GitHub repository is provided at this https URL.
https://arxiv.org/abs/2607.06424
Images tell us what a scene looks like, but rarely what it would feel like to be there. While recent datasets pair visual scenes with electronic-nose measurements, aligning smell signals with images remains challenging because many olfactory cues arise from contextual environmental factors that are not directly visible in pixels. We introduce SCENT, a multimodal framework that uses language guidance as a semantic bridge between vision and olfaction. Our approach leverages Vision-Language Models (VLMs) to generate scene descriptors capturing objects, environmental context, and plausible ambient smell cues suggested by the visual scene. These descriptors provide semantic guidance for learning olfactory representations. We train a smell encoder that maps electronic-nose signals into a shared embedding space aligned with both visual and textual representations, and introduce a languageguided latent decomposition that separates object-specific odors from contextual environmental contributions. Experiments on the New York Smells dataset demonstrate that SCENT significantly improves crossmodal retrieval compared to vision-only baselines, achieving state-of-theart performance on smell-to-image and smell-to-text retrieval tasks. In addition, our framework produces interpretable olfactory representations that enable the disentanglement of complex smell mixtures. Our results reveal the importance of contextual semantic information for grounding olfactory perception in multimodal learning and pave the way for future research in this area.
https://arxiv.org/abs/2607.06402
The rapid advancement of large-scale generative models has accelerated the spread of highly deceptive AI-generated images, making generalized synthetic image detection a critical imperative. Existing forensic networks often struggle with cross-model generalization and realworld degradations due to their reliance on single-domain representations and conventional binary classification optimization. To overcome these limitations, we propose RNSIDNet, a novel forensic framework that achieves robust detection through enhanced RGB-Noise representation learning. Specifically, our method employs a dual-branch architecture where global RGB semantics, extracted by an attention-refined CLIP backbone, dynamically modulate highfrequency noise artifacts captured by Bayar convolutions via a Feature-wise Linear Modulation (FiLM) module. To further enhance the learned representations, we design a Hard Sample-aware Contrastive Learning (HSCL) strategy. By explicitly penalizing challenging training samples, HSCL reshapes the latent feature space to maximize the discriminative margin between pristine and synthetic domains. Extensive experiments across eight public benchmark datasets verify that our model achieves state-of-the-art performance, delivering superior generalization ability, robustness, and computational efficiency. Code and dataset will be publicly available on this https URL.
https://arxiv.org/abs/2607.06354
Wearable motion sensing provides a continuous and scalable window into human behavior and health, making it a natural fit for foundation models, yet its pretraining and scaling principles remain poorly understood. Prior work studies isolated design choices, such as sensor placement or sampling frequency, often under fixed settings and narrow downstream tasks that fail to capture real-world sensing diversity. We introduce Inertia-1, a fully open exploration of wearable motion foundation models. Using massive corpora of accelerometer data from global sources spanning more than 18.2M hours, we build a controlled framework for studying the full lifecycle of wearable motion foundation models, covering data choices such as sensor modality, device placement, sampling rate, window length; model choices such as architectures and model size; and training choices such as pretraining objective and data scale. Extensive evaluations across 15 datasets spanning human activity recognition, freezing-of-gait detection, and disease prediction reveal intriguing findings for building motion foundation models that generalize across tasks and sensing conditions. Collectively, Inertia-1 not only presents state-of-the-art recipes for diverse downstream tasks, but also serves as a comprehensive, practical, and open cookbook for wearable motion representation learning.
https://arxiv.org/abs/2607.06617
Non-invasive prediction of Gleason Grade Group (GGG) in prostate cancer using multiparametric MRI (mpMRI) is clinically vital for reducing unnecessary biopsies. Existing GGG prediction methods face two major limitations. First, they often overlook non-image information critical for GGG prediction, including age, prostate-specific antigen (PSA), and expert priors embedded in radiology reports. Second, they tend to oversimplify GGG as flat categorical labels, failing to account for its intrinsic hierarchy of primary and secondary Gleason patterns. To this end, we propose a novel Knowledge-Driven Ordinal-Aware Learning (KOAL) framework with three synergistic modules. Specifically, the Clinical-Context Modulation (CCM) module uses clinical variables (e.g., age and PSA) to dynamically modulate discriminative image representations. The Knowledge-Guided Prototype Alignment (KGPA) module leverages an LLM to extract group-specific expert knowledge from training radiology reports and clinical guidelines, producing offline semantic anchors describing grade-specific radiological findings without requiring patient-specific reports at inference. Through prototype contrastive alignment, patient-specific mpMRI representations are matched with these anchors to promote pathology-aligned representation learning. The Hierarchical Ordinal-aware Constraints (HOC) module decouples primary and secondary Gleason pattern prediction and maps their probabilistic outputs to GGG via a Differentiable Bio-logic Mapping Layer (DBML), ensuring pathological grading consistency. Experiments on public PI-CAI and in-house datasets demonstrate that KOAL outperforms state-of-the-art methods. Code is available at: this https URL.
https://arxiv.org/abs/2607.06019
3D Gaussian Splatting provides an explicit representation that jointly models geometry and appearance, serving as a scalable foundation for 3D representation learning. Existing pre-training methods for Gaussian representations, such as masked Gaussian reconstruction, primarily capture local structures but offer limited semantic supervision. In this paper, we propose GaussFusion, a multimodal pre-training framework for 3D Gaussian representations. GaussFusion integrates image and text supervision into masked Gaussian modeling through cross-modal semantic alignment, enabling the Gaussian encoder to learn both visual and language-level semantic information during pre-training. To better adapt masked modeling to the non-uniform distribution of Gaussian primitives, we further propose Gaussian Salience-guided Multi-scale Hole Masking (GSHM). GSHM constructs spatially continuous masked regions based on Gaussian salience. By applying hole masks at multiple scales, GSHM encourages the encoder to capture both fine-grained local patterns and broader structural dependencies. Extensive experiments on downstream tasks demonstrate that GaussFusion improves the transferability of Gaussian representations. Notably, GaussFusion outperforms Gaussian-MAE on ModelNet40 and ScanObjectNN (PB-T50-RS) by 0.61\% and 3.85\%, respectively.
https://arxiv.org/abs/2607.05906
We study why diffusion autoencoders can achieve similar image quality while learning substantially different latent structures. We trace this behaviour to optimisation dynamics; we analyse curves of image reconstruction against latent representation quality, revealing trajectories that organise around two distinct regimes early in training. Models in the reconstruction regime prioritise image fidelity early, whereas those in the disentanglement regime improve reconstruction and disentanglement more gradually. We hypothesise that this behaviour can be influenced by targeting shortcut pathways in the diffusion U-Net and controlling early noise-level exposure, thereby shaping the reconstruction-disentanglement trade-off during training. To steer optimisation toward stronger representations, we introduce SteeringDRL, combining gated residual U-Nets with a simple noise-level exposure curriculum for training. Across disentanglement benchmarks, SteeringDRL improves representation quality and reduces seed sensitivity. Our method further extends to spatial disentanglement in object-centric learning, improving segmentation quality on synthetic and real-world datasets.
https://arxiv.org/abs/2607.05319
This paper concerns the problem of unsupervised temporal action segmentation for long, untrimmed videos. Recent successful approaches follow a joint representation learning and clustering paradigm, where optimal transport (OT) is adopted to produce pseudo labels for learning frame representations. These approaches alternate between estimating pseudo labels using OT and optimizing the parameters with gradient descent during training, where OT is used for obtaining the final temporal action segmentation. A major limitation of these works is that they learn a deterministic embedding for frame representations. The iterative procedure between learning deterministic embeddings based on pseudo labels and estimating pseudo labels from the learned embedding can thus get quickly stuck in a local optimum. As an alternative, we thus propose to learn a probabilistic embedding for frame representations. The embeddings are modeled by Gaussian distributions and we sample from the distributions before estimating the pseudo labels. We evaluate our approach on several challenging temporal action segmentation datasets and achieve results comparable to, and in some cases, better than the state of the art. Compared to baselines with deterministic embeddings, our approach improves MoF up to 20.7\% and F1-score up to 19.0\%. Our code is available at this https URL.
https://arxiv.org/abs/2607.05263
In liberalised railway systems, operators must set prices dynamically in an environment with partial observability, as they retain private information about their objectives and performance, where regulatory constraints prohibit communication or direct information exchange between competitors to prevent explicit collusion. Consequently, agents must learn to infer strategic interactions only from observable market data which presents a significant challenge for multi-agent reinforcement learning, where standard approaches typically treat observations as unstructured vectors, ignoring the underlying market topology that governs strategic interactions. To address this, an entity graph modelling approach is proposed, which represents the environment as a graph of operational units, rather than decision-making agents or static infrastructure, encoding competition, coordination, and connectivity relations between entities. Then, an extension of the multi-agent twin delayed deep deterministic policy gradient algorithm with graph-based representation learning processes the features of the entities through a multi-layer relational graph convolutional network and aggregates them via a learnt attention mechanism. Experimental results in a rail pricing reinforcement learning environment show that this novel framework achieves higher revenue and stability in two different settings of increasing market complexity compared to a representative selection of relational and non-relational baselines. The code is publicly available at: this https URL
https://arxiv.org/abs/2607.05179
Low-light degradation reduces image visibility and weakens structural cues that are important for visual representation and scene understanding. Existing low-light image enhancement methods mainly focus on appearance restoration, while insufficiently exploiting scene geometry to preserve structural consistency. To address this limitation, this paper proposes a Depth-guided Multi-scale Attention Network (DMSA-Net) for geometry-aware low-light image enhancement. DMSA-Net introduces depth-related structural priors into low-light representation learning through reflectance-geometry interaction. A Retinex-based decomposition module is first used to obtain illumination-invariant reflectance representations, from which depth cues are inferred to characterize scene structure under degraded illumination. A multi-scale depth-guided fusion strategy is then embedded into a hierarchical encoder-decoder architecture, where depth-aware attention adaptively integrates geometric and appearance features. Experiments on several benchmark datasets show that DMSA-Net achieves effective low-light restoration while improving structural preservation. Moreover, we construct LOL-D, a depth-augmented low-light dataset, to facilitate research on geometry-aware low-light vision.
https://arxiv.org/abs/2607.05005
In patients with breast cancer, pathological complete response (pCR) has been established as a clinically meaningful surrogate marker for long-term outcomes. While commonly treated with neoadjuvant chemotherapy (NACT), effective treatment decision-making remains challenging, as therapeutic response can vary substantially across patients, calling for predictive models capable of accurately estimating individualized treatment response. To address this, we propose an imaging-based 3D spatio-temporal framework for treatment response prediction that integrates a state-of-the-art graph neural network with relational modeling of temporal interactions across timepoints alongside three novel complementary self-supervised treatment trajectory representation learning objectives. Experiments across a cohort of 585 patients from the public ISPY-2 dataset demonstrate that our method substantially outperforms both vision and self-supervised learning baselines across several classification metrics. Alongside establishing a breast cancer pCR prediction benchmark, we include a principled ablation of our method and further introduce and empirically assess the impact of the available number of DCE-MRI timepoints per patient trajectory and the inclusion of inter-scan time-differences. Overall, our study substantiates the utility of clinically meaningful longitudinal medical imagaging modeling for predicting NACT-induced pCR. We will publicly share our code repository and a user-friendly PyPI library for dataset curation upon publication, effectively promoting reproducible open-source research.
https://arxiv.org/abs/2607.04912
Modern machine learning systems demand extensive datasets for visual recognition. Conversely, humans learn with high efficiency despite severe data limitations, often by acquiring broad categorical structures before refining finer distinctions. Inspired by this contrast, we introduce SCALA (Scaffolded Cognitive Architecture for Learning under limited dAta), a hierarchical learning framework grounded in cognitive psychology that guides models from coarse conceptual structures to fine-grained recognition. Our model exhibits human-like cognitive selectivity by effectively prioritizing task-relevant features while suppressing background distractors, a mechanism that induces a fundamental shift in representation learning. This shift is characterized by accelerated cluster formation, reduced intra-class dispersion, and enhanced semantic separability. Empirically, SCALA achieves significant accuracy improvements under severe data scarcity. Furthermore, this hierarchical scaffolding promotes robust generalization to unseen classes and accelerates the acquisition of novel categories. Collectively, our results establish SCALA as a powerful framework for achieving human-level sample efficiency and resilient category generalization in data-constrained environments.
https://arxiv.org/abs/2607.04709