Ontology
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From Perpetrators' Digital Footprints to Behavioral Communities: An Ontology-Driven Framework for Bengali Cyberbullying Analysis--- FULL VERSION
2026-10-22 08:04:48Md. Nesarul Hoque, Md Hanif Seddiqui, Miskatul Anwara, Rudra Pratap Deb NathAbstract
Cyberbullying involves behavioral and contextual patterns beyond isolated abusive messages. However, existing approaches remain fragmented across content detection, semantic representation, and network analysis, with limited interpretable perpetrator representations, multi-scale structural modeling, and explanations of behavior-driven similarity and influence propagation. These limitations hinder the identification of persistent perpetrators, characterization of behavioral communities, and assessment of potentially influential users. This paper proposes Ontology-Driven Cyberbullying Behavior and Network Analysis (ODCBNA), a perpetrator-centric framework integrating requirements-driven ontology design, knowledge graph construction, behavioral modeling, community analysis, and influence modeling. Using the Bengali Contextual and Diverse Cyberbullying (BenCoDiC) corpus as a use case, ODCBNA identifies $1{,}063$ users with at least three bullying comments or replies as perpetrators and represents each through a $64$-dimensional behavioral and contextual feature vector. Cosine similarity and $k$-nearest-neighbor modeling produce a weighted network with $27{,}554$ edges. Louvain analysis identifies six communities with a modularity of approximately $0.495$ and $27$ sub-communities. Feature-contribution analysis identifies the Video, Impact, and User Profile groups as the strongest contributors to behavioral similarity and community separation, while contextual dimensions support interpretation. Community-constrained influence analysis shows that IM Greedy achieves small positive gains in all six communities, although different seed-selection methods produce comparable diffusion spreads despite limited seed overlap. These findings provide an interpretable basis for understanding perpetrator behavior, community organization, and potential influence patterns in Bengali online environments.
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https://arxiv.org/abs/2610.30885
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EHRAdapt: Adapting Pretrained Language Models to Electronic Health Records with Semantic Priors for Rare Clinical Events
2026-10-20 19:02:37Andre R Goncalves, Vincent Liu, Priyadip RayAbstract
Electronic health records (EHRs) encode clinical histories as (time, modality, code) tuples, whereas pretrained language models expect text tokens. Serializing tuples as text inflates sequence length and repeatedly encodes the same structure. We introduce EHRAdapt, an adapter that maps tuples directly into a frozen language model's embedding space. Modality and time gaps enter through a learned embedding and attention biases, and event codes receive dedicated vectors. Learning them is challenging because clinical vocabularies are long-tailed, leaving rare events with few observations. EHRAdapt therefore represents each event vector as the sum of a semantic prior and an evidence residual. The prior is a frozen, ontology-trained biomedical embedding of the event's clinical description, mapped into the input space by a shared learned projection, so it supplies clinical meaning even when observations are scarce. The residual is a learned low-rank, event-specific correction that refines it as evidence accumulates. We perform continued pretraining on records from about 4 million patients with three frozen LLM backbones, OLMo2 1B, Llama3.2 1B, and OLMo2 7B, training only the adapter (0.1--0.6% of all parameters). The full adapter outperforms all ablations in held-out next-event prediction on every backbone. Removing the semantic pathway hurts rare events most, over ten times more than the most frequent ones, whereas removing the residual hurts overall prediction but improves it for the rarest events. On reportable infectious-disease and syndromic classification, EHRAdapt outperforms text-based LLM and count-based baselines and the same LLMs adapted to the same records through next-event prediction, and both pathways improve rare-disease discrimination. The two pathways therefore play complementary roles, visible only when results are broken down by event frequency.
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https://arxiv.org/abs/2609.34007
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Semantic Observability for Autonomous Systems Diagnostics
2026-10-20 17:53:32Jitendra Solanki, Anand Todkar, Ziran MinAbstract
Modern distributed microservice deployments generate massive volumes of heterogeneous, multi-format observability logs across physically and logically partitioned infrastructure. Isolating root causes during cascading failures remains an arduous task for Site Reliability Engineers (SREs), bottlenecked by manual keyword filtering and disjointed temporal correlation across monitoring dashboards. We introduce Semantic Observability, an autonomous multi-agent framework that unifies disparate log streams into a dynamic, queryable Property Graph Database. By modeling physical infrastructure topologies, logical software dependencies, and chronological event sequences as attributed nodes and directed relations, it bridges the semantic gap inherent in flat, unstructured log repositories. Building on this unified substrate, we deploy a stateful multi-agent system orchestrated through Directed Cyclic Graphs (DCGs). The system autonomously navigates the topology, applying causal graph algorithms and temporal back-traversal to isolate the precise blast radius of anomalies. The pruned subgraph is then interpreted by a Large Language Model (LLM) reasoning engine to generate contextualized, code-level Root Cause Analyses (RCA) and actionable remediations. This paper establishes the foundational system architecture, formal relational ontology, and multi-agent control loops of Semantic Observability. We show conceptually how the framework eliminates ambient telemetry noise, reduces Mean Time to Resolution (MTTR), compresses LLM token consumption, and prevents structural hallucinations. We also specify an open-source validation framework on standard benchmarks (LogHub and Train-Ticket), laying the groundwork for a forthcoming companion paper on exhaustive quantitative evaluation and production benchmarking.
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https://arxiv.org/abs/2610.28611
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Gated Prototype Transfer for Zero-Support Medical Vision Language Model
2026-10-20 15:16:09Sumaiya Fazal, Rizwan Qureshi, Laleh Behjat, Samira Ebrahimi KahouAbstract
Realistic few-shot adaptation of medical vision-language models (VLMs) can leave low-prevalence classes without any labeled support. The training-free SS- Text+ solver remains operational in this setting, but its zero-support prototypes receive no visual adaptation and fall back to a purely textual class prototype. We in- troduce Gated Knowledge-Guided Prototype Transfer (GProtoT), a pre-repulsion module that transfers supported-class visual residuals to missing classes using VLM similarity and an ontology-based clinical distance. A validation-free evidence gate scales transfer based on semantic relevance and residual agreement, thereby limiting unsupported extrapolation. In 50 paired realistic one-shot trials on MESSIDOR with FLAIR features, severe and proliferative diabetic retinopathy were absent from every support set. Relative to SS-Text+, gated ProtoT improved missing-class recall by 5.23 points, average class accuracy by 1.37 points, and the missing/supported recall harmonic mean by 1.83 points. It reduced negative- transfer frequency from 46-48% for ungated transfer to 2%, while at the cost of reductions of 1.20 percentage points in supported-class recall and 0.45 percentage points in top-1 accuracy. These results indicate that evidence-based gating provides a safety mechanism for the knowledge source. GProtoT is based on SS- Text+ and requires no gradients, validation data, or additional model inference, of- fering a low-compute path toward accountable adaptation under incomplete clini- cal supervision. Code is available: this https URL
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https://arxiv.org/abs/2610.28350
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APOLO: Automatic Prompt Optimization for Ontology Learning
2026-10-20 07:08:17Huu Tan Mai, Roman Kochnev, Cuong Xuan Chu, Lukas Lange, Heiko Paulheim, Daria StepanovaAbstract
Ontology Learning (OL) from text has advanced with the emergence of Large Language Models (LLMs), but it remains challenging due to the limited availability of annotated training data and the difficulty of adapting LLMs to perform OL effectively. We address this via APOLO - Automatic Prompt Optimization for Ontology Learning, by casting OL as an explicit prompt optimization problem over LLM modules. To obtain training data, we employ a multi-agent system that generates text-ontology pairs from existing expert-curated ontologies. We then propose two ontology learner architectures: a greedy and an autoregressive learner, and optimize both using GEPA, a greedy evolutionary prompt optimizer built on DSPy. Experiments on two ontologies - a biomedical (DOID) and a plant ontology (PO) show consistent improvements after optimization across nearly all model and mode combinations, with autoregressive learners achieving the largest gains. Our results demonstrate that prompt optimization is a viable and lightweight alternative to fine-tuning for OL, and that the autoregressive formulation better captures ontological structure than the greedy approach.
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https://arxiv.org/abs/2609.34540
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SCODEL: Shared Canonical Ontology Definitions for Food Entity Linking and Ontology-Grounded Recipe Knowledge Graphs
2026-10-20 05:02:01Nuhu Ibrahim, Rishi Ravikumar, Ayuba Dauda, Fuqi Xu, Robert Stevens, Riza Batista-NavarroAbstract
Identifying recipe entities and linking them to ontology concepts is fundamental for semantic recipe understanding. However, food mentions in recipes are often ambiguous, context-dependent, and lexically diverse, making ontology entity linking (EL) challenging. We propose SCODEL, a streamlined, model-agnostic approach based on a central idea: contextual food mentions and ontology concepts that refer to the same entity should learn the same canonical ontology-oriented definition. SCODEL uses these shared definitions as a semantic normalisation layer, providing complementary semantic information to existing EL models without requiring a new linking architecture. We further introduce ReciLinkD, the first benchmark for contextual food ontology entity linking in recipes. Experiments show that SCODEL consistently improves three modular EL models (ReFinED, GSM-EL, and BLINK): SCODEL x BLINK achieves the highest Hit@1 on seen concepts (88.33%), while SCODEL x GSM-EL achieves the highest Hit@1 on unseen concepts (83.15%), outperforming the strongest large language model (LLM) based EL baseline in each setting. Experiments on a biomedical ontology benchmark further demonstrate that SCODEL generalises beyond the food domain. Finally, we use SCODEL to ground food mentions at scale and construct an ontology-grounded recipe knowledge graph, demonstrating its utility for ontology-aware recipe retrieval and corpus-level food analysis.
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https://arxiv.org/abs/2610.27637
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Discrete Neural Interlingua for Ontology-Agnostic EHR Modeling
2026-10-19 17:58:11Tong Ding, Caiwei Tian, Dongmin Bang, Ming Y. Lu, Sophia J. Wagner, Andrew Zhang, Rowland Pettit, Long Phi Le, Faisal MahmoodAbstract
EHR foundation models promise scalable clinical prediction across health systems, yet their deployment is constrained by a tokenization bottleneck. The same clinical concept can appear as different ontology codes, local identifiers, synonyms, or free-text descriptions, which standard EHR tokenizers treat as unrelated symbols. A model trained on MIMIC-III with a closed-vocabulary tokenizer can use only 13% of eICU events. We introduce MEDIATOR, a discrete ontology-agnostic tokenizer that maps any clinical concept expressed as text into a shared vector-quantized codebook, turning EHR harmonization into open-vocabulary tokenization without manual mappings or a fixed vocabulary. Trained with synonym supervision and guided by enriched concept descriptions, code co-occurrence, and relation graphs, MEDIATOR collapses equivalent expressions while organizing distinct concepts in a medically meaningful discrete space. Used as the token interface of an EHR Transformer, MEDIATOR improves mean AUPRC over the strongest prior tokenizer by 4.0 points (8% relative) on 20 MIMIC-III tasks and by 8.6 points (29% relative) in zero-shot transfer to 14 eICU tasks, where it uses all events. The transfer gain combines coverage and representation, as MEDIATOR remains the best tokenizer under identical inputs (+1.0 and +1.9 points on operational and subcohort-mortality tasks). Same-encoder controls show that the text encoder drives in-domain accuracy, while the learned objectives of MEDIATOR drive transfer robustness and entity-linking quality. MEDIATOR also enables transferable attribution across hospitals.
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https://arxiv.org/abs/2610.27047
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MedPAO-Assist: Edge-Deployable, Modality-Aware Agentic AI for Radiology Report Structuring
2026-10-17 06:13:06Shrish Shrinath Vaidya, Minmini Selvam, Ganapathy KrishnamurthiAbstract
The adoption of Large Language Models for radiology report structuring has been largely dominated by either proprietary cloud-based models or large open models requiring high-end GPUs for deployment, which is a critical bottleneck for clinical adoption in radiology workflows that demand data privacy and offline operation. To address this, we present MedPAO-Assist, an edge-deployable agentic framework that generates structured radiology reports directly from radiologist dictation and voice commands, requiring only $\approx3.3$ GB peak RAM and achieving an average end-to-end latency of $\approx31$ seconds on a standard laptop CPU through an asynchronous, multi-threaded execution pipeline. The system currently supports four major imaging modalities -- Chest X-ray, Chest CT, Abdomen CT, and Brain MRI. To our knowledge, it is among the earliest agentic systems to run its entire pipeline with a Small Language Model (SLM) in the 0.6B-parameter range. This multi-agent architecture, built around an Extract-Ground-Generate paradigm, performs concept extraction, SNOMED-CT grounding, and structured report generation, followed by a speech-driven human-in-the-loop correction phase, together forming a fully "no-touch" reporting workflow that requires no keyboard input, external API calls, or internet connectivity. We evaluate each pipeline stage individually -- concept extraction, ontology grounding, and concept categorization and report hardware profiling results demonstrating the system's feasibility for real-time, CPU-only clinical deployment.
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https://arxiv.org/abs/2610.26913
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AgentOnto: Ontology-Guided LLM Agents for Enterprise Data Analytics
2026-10-16 11:22:38Dayan Pan, Bincheng Zuo, Xiaojian Wang, Daogang Zhang, Jingyuan WangAbstract
Enterprise data analysis requires agents to connect analytical requests with knowledge distributed across databases, business documents, and existing example tasks. Without an explicit representation of this knowledge, an agent may produce incorrect analytical results and cannot reliably incorporate feedback. We present AgentOnto, an ontology-guided LLM agent for enterprise data analytics. AgentOnto organizes heterogeneous enterprise knowledge into an ontology that directly guides analysis and incorporates confirmed feedback. Iterative Ontology Preparation further improves the ontology through self-generated analysis tasks. We evaluate AgentOnto on two public data sources. AgentOnto substantially outperforms representative methods, while module-level evaluations confirm the effectiveness of ontology construction, analysis, and updating. A real-world deployment further demonstrates its practical value in enterprise analytics. These results demonstrate that explicitly constructing, using, and updating enterprise knowledge supports reliable and adaptable data analysis.
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https://arxiv.org/abs/2610.23317
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Graph Serializations for Reasoning LLMs: A Study Across Knowledge Extraction and Structural Reasoning
2026-10-15 23:12:21Julien Yu, Mihaela Bornea, Avirup Sil, Katrin KirchhoffAbstract
The way a knowledge graph is serialized as text for inclusion into LLM context can substantially affect downstream LLM performance, with prior work reporting tens of percentage points variations across formats. However, existing studies consider only a limited set of representations and predate frontier reasoning models, which now offer stronger reasoning, instruction-following, and long-context capabilities. We evaluate 15 graph representation formats across nine frontier LLM configurations on ontology-based knowledge extraction and structural graph reasoning tasks. While knowledge extraction is relatively insensitive to different serialization formats, the choice of the optimal format for structural reasoning tasks significantly affects accuracy. We demonstrate that the optimal representation choice depends on model, query, and task and propose to approach graph serialization as a dynamic orchestration decision.
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https://arxiv.org/abs/2610.22734
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Ontology Refinement with Embeddings and LLMs: A Case Study on CASTON
2026-10-15 08:10:05Hui Yang, Ziyu Li, Xuan Liu, Anders Jarfors, He Tan, Jiaoyan ChenAbstract
Ontologies are widely used to represent and organize complex knowledge in domains such as biomedicine and healthcare. However, constructing reliable ontologies remains challenging, as class hierarchies, whether manually or automatically constructed, may contain subtle subsumption errors that require careful refinement. We study this problem in CASTON, a casting-domain ontology, and present a lightweight but scalable refinement workflow that combines a fine-tuned ontology embedding model with Large Language Models (LLMs). The embedding model is used to extract a limited number of candidate axioms for refinement together with possible replacement candidates, and an LLM then returns repair suggestions. In a small expert evaluation, the default configuration using a CASTON-fine-tuned OnT embedding model and Qwen3-8B produced reliable high-confidence repairs: all six high-confidence replacements were accepted by both domain experts. The implementation is available at this https URL.
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https://arxiv.org/abs/2610.21466
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Steering Vectors for Competing Ethical Frameworks Are Interchangeable: A Competing-Target Test for Activation Steering
2026-10-14 01:00:35Weilun Xu (EPFL), Zipeng Sun (McGill University,Mila)Abstract
Activation steering adds a vector to a model's hidden states to control a named behaviour. A gain on that behaviour, however, does not show that the vector controls it directly: it may act through a component shared with neighbouring behaviours, which unsteered and random baselines cannot separate. We introduce the competing-target test: a vector is compared with the vector built the same way for a competing target, and an equivalence test states when their difference is below a useful margin. We apply it in open-weight models to vectors for Kantian deontology, which judges an act by the rule it follows, and act utilitarianism, which judges it by the welfare it produces. On held-out situations, prompting a framework raises its score and lowers the other's, whereas vectors for either framework move both scores alike, and none reaches the margin. The two vectors share most of their direction, a request to apply some framework; the same construction separates an optimistic from a pessimistic tone, whose vectors share much less. What a vector shares with its competitors therefore sets what it controls: steering a perspective can deliver a mixture, and measuring a disposition can measure its neighbours, unless tested against the competing target.
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https://arxiv.org/abs/2610.19359
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From Qualitative Text to Integrated Evidence: The Parallel-Then-Integrated Procedure
2026-10-13 20:29:58Elyas Irankhah, Ashley Hagaman, Samah FodehAbstract
Mixed methods research offers established strategies for integrating qualitative and quantitative evidence, but less guidance for integrating two computational representations of the same qualitative corpus. This methodological study introduces Parallel-Then-Integrated (PTI), a four-step procedure for explicit and traceable integration. We present PTI using 1,203 interview paragraphs from 29 mothers in Nepal. The two representations were ontology-guided Patient Voice (PV) coding with PVminer and data-driven themes generated through non-negative matrix factorization (NMF). A theme-complete crosswalk documented convergence, divergence, and preprocessing-sensitive differences. Depression status, based on Patient Health Questionnaire-9 (PHQ-9) scores, served as a secondary external anchor for exploratory association checks. PTI provides a structured approach for integrating computational representations of qualitative text within mixed methods research.
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https://arxiv.org/abs/2610.19164
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Plant Memory: Technical Language Processing and a Verified Maintenance Ontology for Agent-Accessible Failure Knowledge from SAP PM Work Orders
2026-10-13 20:02:31Akash RajAbstract
Maintenance work orders are the largest written record of how industrial equipment fails, yet in most plants they are close to unusable for analysis. Short texts are abbreviated and misspelt, asset identity is buried in free text, work-type labels contradict the work described, and the fields that matter most for reliability (symptom, root cause, action taken) are usually empty. As a result, diagnostic knowledge stays with senior technicians and leaves when they do. We present Plant Memory, a system that applies technical language processing (TLP) to SAP Plant Maintenance (PM) exports and builds an ISO 14224-aligned maintenance ontology in which every extracted statement is a reified fact carrying a confidence score, the evidence it was read from, and a verification state. Extraction is rule-first, with an optional large language model (LLM) acting as a second reader whose disagreements raise a fact's review priority rather than overwrite it. Technicians verify facts through a review queue, answer targeted knowledge-gap questions where failures repeat without a recorded cause, and approve or reject ontology drift proposals when new terms appear. The resulting graph is served to people through a web application and to AI agents through a Model Context Protocol (MCP) server, so both query the same verified knowledge and every answer cites the work orders behind it. On a synthetic 12-month export of 400 work orders from a parboiled-rice plant, rule-based extraction reaches 96.2% component accuracy, 88.9% failure-mode accuracy and 100% root-cause precision at 62% coverage; on 28 diagnostic questions, ranked root causes from the ontology are correct at top-1 in 82.1% of cases against 53.6% for the raw SAP root-cause column.
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https://arxiv.org/abs/2610.19131
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SMI: Ontology-Grounded Semantic IDs for Hierarchy-Aware Medical Concept Representation
2026-10-13 16:30:01Ziyang Song, Lia Shen, Yixuan Li, Qincheng Lu, Weihao Li, Haoran Xu, He Zhu, Xinyu Wang, Yue LiAbstract
Biomedical language models (LMs) provide strong representations for clinical tasks, but they often fail to capture the hierarchical structure among medical concepts. This limitation is especially pronounced for rare and fine-grained clinical codes in long-tailed vocabularies, where hierarchy-agnostic LM representations become less informative as concept frequency decreases. We introduce Semantic Medical Identifier (SMI), a training-free framework for constructing ontology-grounded Semantic IDs and hierarchy-aware medical concept representations. For each diagnosis, procedure, or medication concept, SMI defines its Semantic ID as the coarse-to-fine path through an expert-defined medical ontology. SMI then aggregates frozen biomedical LM embeddings across the corresponding ontology levels to form hierarchy-aware medical concept representations that preserve coarse-to-fine clinical semantics. The base SMI uses uniform aggregation across ontology levels, while a level-weighted variant selects global level weights on validation data. Our theoretical analysis shows that SMI yields more informative medical concept representations than hierarchy-agnostic LM embeddings, particularly for rare and fine-grained clinical concepts. Experiments show that SMI captures meaningful hierarchical structure and improves clinical relation prediction. On MIMIC-IV, SMI improves mortality prediction, readmission prediction, drug recommendation, and rare drug prediction. On eICU, SMI yields more robust patient representations under cross-hospital distribution shift.
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https://arxiv.org/abs/2610.18672
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EventLens: Event-Structure Reinforcement Learning for Video Understanding
2026-10-12 04:46:04Guowen Zhang, Boshen Xu, Zihao Yue, Ziheng Wang, Xiaokun Liu, Xin Tao, Wenyu Qin, Pengfei Wan, Qin JinAbstract
Recent multimodal large language models (MLLMs) achieve strong results on video question answering, yet often fail to recover the temporal structure that makes a video coherent. They may merge neighboring events, miss single-event progression, or infer implausible relations across events. We study structured temporal understanding as the ability to recover event structure from visual evidence, including event boundaries, single-event progression, and multi-event relations. We argue that this gap arises from a mismatch between current post-training objectives and temporal reasoning, where caption-style supervision allows models to rely on language shortcuts rather than visual temporal grounding. To address this, we propose EventLens, a vision-centric reinforcement learning framework that learns video understanding through event-structure recovery. Instead of reconstructing captions, EventLens trains models to recover temporal structure under controlled perturbations, such as altered temporal granularity, reversed progression, and shuffled event order. We instantiate this framework with a three-level temporal ontology and derive three verifiable task families: event segmentation, progression discrimination, and multi-event relation reasoning. These tasks admit deterministic rewards, enabling task-specialized GRPO training without human preference labels or learned reward models. We further introduce multi-teacher on-policy distillation (MT-OPD) to consolidate specialized policies into a unified model. Experiments on Qwen3-VL backbones show consistent improvements on temporal grounding and event-sensitive reasoning benchmarks, while preserving general video-QA performance. Learning curves further demonstrate that EventLens achieves comparable downstream transfer with significantly reduced training cost compared to direct mixed RL optimization.
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https://arxiv.org/abs/2610.16172
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LURE: a Phase-Labelled Synthetic Corpus of Online-Grooming Exchanges
2026-10-11 20:41:08Emanuele Florindi, Valentina Franzoni, Ludovico Guercio, Alfredo Milani, Mattia PolticchiaAbstract
Phase-annotated conversational data is essential for studying the progression of online grooming of minors and for developing early warning tools. However, the only publicly available source (i.e., Perverted-Justice archive, which contains a subset coded using ChatCoder) is small, outdated, and frozen. We present a synthetic corpus of groomer-victim exchanges, generated using a retrieval-augmented pipeline running on institutional hardware. This pipeline uses an openly available, eight-billion-parameter, refusal-ablated language model. The corpus was created using the five stages of the responsible-generation protocol for synthetic datasets: ontology-driven design based on the ChatCoder luring-communication scheme (eight communicative tags mapped onto four grooming phases); multi-model prompt testing; human-in-the-loop supervision; semantic and feature-level validation; and modality-aware documentation. The released corpus contains 2,121 unique exchanges across seven tags and four phases, each accompanied by a Plutchik emotion field. Validation quantifies the integrity and lexical profile of the corpus, as well as the reproduction of real seed lines, in-domain label recoverability (tag accuracy: 0.85; phase accuracy: 0.93) and its transfer to real ChatCoder offender lines, which were coded automatically at the eight-tag level (31,640 lines) and by human coders at the three-construct level (10,876 posts). Accuracy was measured for lexical and sentence-embedding features, while a real-versus-synthetic discriminator was able to separate the two domains with 91% accuracy. The scope of the corpus includes controlled, phase-conditioned experimentation, pipeline development and augmentation alongside real data and awareness material. The corpus, its datasheet and the audit code are released with vetted access.
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https://arxiv.org/abs/2610.15908
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Gugak-VocalSet: A Multi-Genre Studio-Quality Dataset of Korean Traditional Singing with Sigimsae Annotations
2026-10-11 05:14:13Danbinaerin Han, Wonil Kim, Seah Hong, Dongjoo Moon, Jaeok Lee, Jongpil Lee, Chaewon Kim, Juhan NamAbstract
We present Gugak-VocalSet, the first publicly available audio dataset for Korean traditional singing with dense annotations of sigimsae, a structured pitch contour system of vocal expressions. Gugak-VocalSet contains 24.5 hours of unaccompanied solo vocal recordings across 305 tracks of representative repertoire curated by the National Gugak Center, performed by 20 professional singers in a controlled studio environment with fixed key and tempo. In addition to genre, lyrics, and mood/timbre tags, the dataset provides a unified sigimsae ontology and approximately 68,000 segments (71,700 instances including multi-label) of audio-grounded sigimsae annotations; the ontology adopts a functional-position-based hierarchy designed for consistent application across genres, and 14 expert annotators specializing in Korean traditional music performed segment-level labeling accordingly. Baseline experiments on sigimsae classification and event detection show that domain-informed F0 representations remain competitive with, and on classification surpass, frozen probing of a general-purpose music foundation model, while pitch and spectral cues play complementary roles in event-level detection. Companion page: this https URL
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https://arxiv.org/abs/2610.15350
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OntoAR-HAR: Ontology-Guided Agentic RAG with Personalized Memory for Human Activity Recognition
2026-10-11 02:57:12Xiangqing Lu, Tao Zhu, Liang Yu, Shuangjian Li, Lulu Ban, Furong Duan, Mingxing Nie, Liming Chen, Yaping WanAbstract
LLMs increasingly support sensor-based human activity recognition (HAR) by linking motion signals with activity semantics and physical knowledge. Retrieval-augmented generation (RAG) grounds decisions in sensor examples and domain features, enabling training-free target-user inference with less dependence on raw numerical arrays. However, existing LLM/RAG-based HAR typically searches single-level activity spaces using static population knowledge. Consequently, they compare many unrelated candidates using the same static population evidence and overlook personalized motion patterns. We propose OntoAR-HAR, an ontology-guided agentic RAG framework combining static population and personalized knowledge. Its tree-structured activity ontology decomposes classification into local decisions among semantically related activities. The static store supplies node-constrained examples, while offline-discovered executable signal features provide numerical evidence for local distinctions. During inference, the personalized store collects selected user observations, which the LLM integrates with static knowledge and signal features while traversing the ontology to an activity label. Cross-subject and heterogeneous-sensing experiments show complementary gains from hierarchical retrieval and personalized memory across multiple LLM backbones, achieving state-of-the-art performance. By explicitly modeling hierarchical relations across activity granularities, OntoAR-HAR also addresses the long-overlooked semantic inclusion problem and avoids treating related labels as independent categories.
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https://arxiv.org/abs/2610.15292
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scHFBiMamba: a bidirectional Mamba autoencoder for cardiac disease-state classification from single-nucleus RNA-seq data
2026-10-10 18:47:11Ugo Lomoio, Pietro Hiram Guzzi, Pierangelo VeltriAbstract
To evaluate whether a compact bidirectional state-space autoencoder improves joint classification of species, cell type, and disease state from single-nucleus RNA-sequencing profiles in heart failure (HF), while yielding interpretable gene attributions. Building on the dense denoising autoencoder (DAE) and MLP framework of Ruz Jurado et al., we developed scHFBiMamba, combining a bidirectional Mamba autoencoder (BiMambaAE) with an MLP head. BiMambaAE maps 16,545-gene profiles to 350-dimensional latent representations using 13.2M parameters, about 14.6-fold fewer than the dense DAE (192.9M). We compared six encoder-classifier configurations on 38,275 held-out cardiac nuclei using McNemar tests with Benjamini-Hochberg correction, and assessed nine classifiers on frozen representations. Biological relevance was evaluated by comparing SHAP-derived differentially explained genes with differentially expressed genes against curated HF-related Gene Ontology keywords. BiMambaAE+MLP achieved the highest aggregate F1: pooled macro-F1 across 13 outputs was 0.966 versus 0.957 for DAE+MLP, and the mean category macro-F1 was 0.977 versus 0.970. It significantly improved cell-type and disease-state accuracy (adjusted p=7.1e-3 and p=4.8e-6, respectively), with species F1 of 1.000. SHAP-derived differentially explained genes achieved a pathway-enrichment benchmark F1 of 0.105 versus 0.053 for differentially expressed genes. Compact bidirectional state-space autoencoders can outperform substantially larger dense autoencoders for joint cardiac transcriptomic classification while reducing parameters. scHFBiMamba enables accurate multi-task prediction and hypothesis-generating gene-level interpretation. Code: this https URL.
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https://arxiv.org/abs/2610.15117
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