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On the Role of MRI Sequences in Cross-Dataset Generalization for Brain Tumor Segmentation

2026-08-30 18:17:18
Henrique Zan Grande, Jo\~ao G. Pitol, Lucas B. Schuck, Rafael V. Serenato, Rayson Laroca, Andre Gustavo Hochuli

Abstract

Brain tumor segmentation in magnetic resonance imaging (MRI) is a critical task for diagnosis and treatment planning. Despite the success of deep learning architectures such as U-Net and its variants, performance degradation across datasets remains a major challenge, particularly under domain shift and limited annotated data. To address this issue, this study systematically evaluates how individual MRI sequences influence model robustness across two well-known datasets. A ResUNet-based framework is employed, where each modality is trained independently to isolate its effect under a controlled cross-dataset evaluation protocol with tumor size stratification, without target-domain training, or with limited domain adaptation. Results show that the T2f/FLAIR sequence achieves the best cross-dataset performance, with Dice scores exceeding 75%. It consistently outperforms other modalities across most tumor size ranges, while multi-sequence training further improves performance. Additionally, even limited target-domain adaptation yields rapid initial gains, reducing the need for extensive annotations and costly retraining. Our source code is publicly available at this https URL.

Abstract (translated)

URL

https://arxiv.org/abs/2608.29944

PDF

https://arxiv.org/pdf/2608.29944.pdf


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