Medical image analysis remains fundamentally challenging because of the intricate geometric and topological structures present in medical data. Conventional convolutional neural networks model images as regular Euclidean grids, limiting their ability to preserve geometric relationships and higher-order structural information. Recently, manifold topological deep learning (MTDL) has emerged as a promising paradigm that integrates deep learning with geometric and topological representations. Nevertheless, existing methods have not yet fully exploited discrete manifold structures within combinatorial complex neural networks. To bridge this gap, we introduce CNMTDL, a MTDL framework that integrates Hodge decomposition with a combinatorial attention mechanism. In our approach, medical images are represented as discrete manifolds and decomposed into three Hodge components. Features extracted from these components are concatenated and embedded into a combinatorial complex architecture, enabling enhanced higher-order message passing between $0$-cells and $2$-cells through attention-based blocks. We evaluate CNMTDL on six two-dimensional and three-dimensional datasets from the MedMNIST v2 benchmark, demonstrating its effectiveness for medical image analysis.
https://arxiv.org/abs/2609.25453
In this paper, we introduce the Directional Total Variation-Regularized Implicit Neural Representation (DTV-INR), an advanced variational paradigm that synergistically integrates coordinate-driven implicit neural networks with an anisotropic, structure-tensor-informed total variation regularizer tailored for resolution-agnostic image super-resolution. Casting the continuous-to-discrete acquisition process into an ill-posed inverse problem framework, our formulation equips a SIREN-architected coordinate network with a dynamic Riemannian metric tensor field D(x). By leveraging its spectral decomposition, the proposed regularizer preferentially directs diffusion parallel to dominant structural contours while penalizing cross-edge dissipation, successfully circumventing the classical staircasing artifacts inherent to scalar total variation schemes. We rigorously prove the well-posedness of this formulation in H^1(Omega) by establishing the existence, uniqueness, and metric stability of the variational minimizer, and realize this via an alternating projected optimization algorithm that decouples network parameter tuning from adaptive tensor field updates. Comprehensive experiments conducted on clinical brain magnetic resonance imaging (MRI) and biomedical transmission electron microscopy confirm substantial quantitative and qualitative improvements, yielding PSNR enhancements reaching +5.05 dB over baseline unregularized INRs and +1.71-2.85 dB over isotropic TV-INR across continuous (non-integer) upsampling factors, alongside remarkable noise robustness up to sigma_eta = 0.10 and monotonic preconditioned convergence behavior.
https://arxiv.org/abs/2609.25429
Counterfactual image generation answers questions about how a subject would have looked under retrospective, hypothetical scenarios. Recent methods have improved perceptual quality, identity preservation and faithfulness to an underlying causal model, but their adoption in healthcare is limited by scarce annotated data, distribution shift between datasets, and mismatches between pretrained generative models and those required for counterfactual inference. We propose specialisation, a data and parameter-efficient framework for adapting pretrained, non-causal generative models into causal mechanisms under distribution shift. Based on this framework, we train a radiology counterfactual image generation model, called RadCF, using latent flow matching. We validate our approach on three chest X-ray datasets spanning different dataset shifts, data volumes, and counterfactual questions, associated with challenging, highly-localised interventions. Our results show that RadCF and specialisation improve counterfactual soundness over existing methods while being data and parameter efficient, and that the resulting counterfactuals can detect and mitigate shortcut learning in a downstream medical classifier. Code is available at this https URL.
https://arxiv.org/abs/2609.24879
Medical agents increasingly combine general reasoning models with specialized clinical tools, yet their capabilities remain largely fixed by what clinicians and engineers design before deployment. Recursive self-improvement (RSI) offers a different paradigm in which agents learn from their own failures and autonomously expand their capabilities, but directly applying RSI to medicine introduces fundamental safety challenges. We introduce MedRSI, the first recursive self-improvement framework for medicine, which continuously transforms diagnostic failures into new clinical capabilities through tool composition and task-specific model training. Inspired by clinical practice, MedRSI introduces two mechanisms for clinically aligned self-evolution. Clinical-cost-aware failure prioritization directs improvement toward errors according to their potential clinical consequences rather than frequency alone. Fast discovery with slow registration separates rapid capability invention from conservative adoption, allowing new tools to enter the persistent agent only after demonstrating sustained benefit across subsequent patient cohorts. Across public glaucoma and heart disease benchmarks and two private clinical tasks, MedRSI progressively develops segmentation, measurement, prediction, multimodal reasoning, and generative capabilities, surpasses manually engineered medical agents, and autonomously discovers solutions to clinical problems not anticipated by its original designers. Our results show that medical agents need not remain constrained by capabilities specified before deployment: with clinically grounded mechanisms governing what to improve and what to retain, they can continuously construct, validate, and accumulate new capabilities from diagnostic experience. Code is available at this https URL.
https://arxiv.org/abs/2609.24838
Advances in processing power, camera technologies, and mobile image analysis have made smartphones and other mobile devices, such as laptops, increasingly suitable for medical diagnosis and healthcare applications. Researchers have developed low-cost solutions for the early detection and monitoring of various health conditions, including eye and ENT diseases, malnutrition, heart rate variability, skin and oral conditions, and injuries, using images captured by non-medical devices such as smartphones and webcams. This survey examines existing research on mobile image-based medical diagnosis, with an emphasis on its potential to enable low-cost and accessible healthcare. We comparatively analyze state-of-the-art solutions across different healthcare application categories, examining their advantages and limitations. Based on this analysis, we identify desirable characteristics of mobile image-based diagnostic tools and highlight areas where existing approaches have made progress as well as areas requiring further research. We also discuss application-specific and common challenges and outline directions for future research. Overall, this study provides a comprehensive overview of mobile image-based healthcare solutions and their potential to support low-cost disease diagnosis and monitoring, particularly for underserved populations in remote and resource-constrained settings.
https://arxiv.org/abs/2609.24814
Post-training quantization (PTQ) enables efficient deployment of large language models, and PTQ methods are usually optimized and evaluated with generic reconstruction, perplexity, or answer accuracy. But in explanation-critical domains, preserving only the final answer may be insufficient, since users may also inspect generated rationales to judge whether a prediction is trustworthy. We study this issue in medical multiple-choice question answering, where rationales should provide evidence that supports the selected answer. We propose an explanation-aware objective for transformation-based PTQ. Our method builds an offline faithfulness cache from full-precision teacher rationales and uses it during optimization to preserve answer-supporting evidence tokens and evidence-conditioned answer behavior. We instantiate it on OSTQuant under W4A4KV4 quantization and evaluate four 7B--8B medical and instruction-tuned LLMs on MedExQA, MedExpQA, and ChallengeClinicalQA. While a same-calibration OSTQuant baseline preserves task accuracy, it can substantially weaken answer-supporting rationales. Our objective is to preserve the full-precision model's answer-supporting behavior rather than improve gold-label accuracy, and our method better preserves the full-precision model's answer behavior and rationale-to-answer support. These results suggest that PTQ for explanation-critical settings should evaluate preservation of answer-supporting evidence, not only answer accuracy. Code and evaluation scripts are available at this https URL.
https://arxiv.org/abs/2609.24799
Latent diffusion models now dominate medical image generation, and every such pipeline rests on a \emph{tokenizer} that compresses images into the latent codes for image generation to operate on. Thereby, the tokenizer choice bounds every downstream task from reconstruction fidelity and generation quality to the representations available for downstream analysis. Yet, medical imaging pipelines routinely utilize tokenizers from natural imaging on the hypothesis that their behavior carries over. However, this is an assumption never tested in the medical imaging regime, where datasets are orders of magnitude smaller and images exhibit far lower inter-sample variance. We present a systematic evaluation of medical image tokenizers evaluating thirty configurations across ten model families on twelve datasets at three compression factors, spanning reconstruction, generation, latent geometry, downstream classification, and memorization. We find that (1) performance on image reconstruction and generation strongly correlate, unlike prior reports on natural images; (2) modern tokenizers use nearly all of their codebook entries, but still leave most of the latent space unused; (3) training-set memorization is mild and is further suppressed by stronger latent space compression; and (4) discrete quantization can largely preserve downstream classification, with lookup-free schemes being the main exception.
https://arxiv.org/abs/2609.24691
Answering epidemiological questions from real-world clinical data requires medical coding, schema-aware SQL, and validation of implicit choices about populations, denominators, and time. We present Ascent, an agentic system that exposes medical coding, question answering, and cohort analysis through a shared Model Context Protocol tool surface for standardized and native schemas. We introduce EpiTrap, a dataset testing whether systems avoid recognized pharmacoepidemiological errors, and compare a fixed pipeline with agents across models and orchestrators. With capable models, agents improve accuracy over the fixed pipeline by an average of 27 and 20 percentage points on native and standardized schemas, respectively. These gains require more tool calls and longer runtimes. Experience from real projects highlights the system's value for feasibility assessment, diagnostic iteration, and expert-guided analysis.
https://arxiv.org/abs/2609.24620
Neural Cellular Automata (NCAs) are a new type of neural network architecture which enable accurate and robust inference at extremely small model sizes. Recently, NCAs have advanced to become interesting low-resource alternatives to convolution- and attention-based architectures for various tasks such as image analysis, synthetic image generation, and simulation. The rapid development and increased research interest necessitate a comprehensive review of the emerging technology. This review provides an overview of the fundamentals of NCAs, applications to medical imaging, as well as insights into the state of the art. We analyze recent modifications to the originally proposed NCA architecture with respect to their efficiency and accuracy. Furthermore, we review practical applications in real-world scenarios with a focus on medical image analysis, segmentation, classification, registration, depth estimation, and image synthesis. Finally, we identify several advantages of NCAs, research gaps, and conclude with an analysis of future opportunities for NCAs in medical applications in confined settings or areas that have particular demands for robustness or efficient data processing.
https://arxiv.org/abs/2609.24595
Deploying Large Language Models (LLMs) in healthcare requires robust performance across two complementary dimensions - diagnostic reasoning: the convergent, evidence-driven task of inferring a patient's condition from clinical data to produce a diagnosis, and clinical healthcare reasoning: the broader, navigational judgment required to communicate, plan, and adapt across multi-turn clinical interactions where a single correct answer may not exist. Recent benchmarks such as HealthBench and MedXpertQA reveal persistent weaknesses in both areas, exposing failures in complex diagnostic scenarios and limitations in contextual, patient-centered dialogue. We introduce a sequential training framework that targets these facets using synthetic data and rubric-based reinforcement learning. First, we improve diagnostic reasoning using MedBullets-derived questions with rule- and rubric-guided Reinforcement Learning (RL). We then shift to clinical reasoning by generating 5.3k synthetic multi-turn scenarios, each paired with multi-dimensional rubrics to comprehensively assess the response. This approach yields over 10% improvement on MedXpertQA, and our 30B model achieves 50.1% accuracy on HealthBench-Hard, surpassing proprietary baselines including GPT-5 (thinking). Our results show that targeted synthetic datasets and rubric-based training can systematically improve both diagnostic and interactive clinical reasoning in medical LLMs.
https://arxiv.org/abs/2609.24480
Sparse on-policy distillation (OPD) allocates teacher supervision to a small subset of tokens in student-generated trajectories. However, useful teacher guidance can yield a noisy update when its gradient is estimated from a sampled next token. We study this estimation problem at a fixed prefix in information geometry and propose an information-efficiency ratio (IER) based on a signal-to-noise decomposition. IER characterizes relative gradient estimation error under an optimal scalar baseline. A candidate-set approximation enables token selection based on IER and its combination with existing usefulness scores, while retaining the sampled reverse-KL training objective. On mathematical and medical reasoning tasks, adding IER improves existing selectors in multiple settings, with sparse configurations matching or exceeding full OPD without token selection at small token budgets of 0.1\%--1\%. These results support accounting for both usefulness and gradient-estimation reliability when allocating sparse supervision. Our code is available at this https URL.
https://arxiv.org/abs/2609.24432
With the advent of Large Language Models and its instruction following capabilities a promising application is the task of summarization. Within this domain of task the extractive sub-task of clinical protocolling has emerged as a topic of particular interest as it can significantly reduce the downtime and protocolling burden of health-care workers thus enabling them to focus on their core work helping humans. A further step towards automation is the direct generation of clinical notes from speech without intermediate transcripts, reducing processing time while preserving information such as coughing or other paralinguistic cues that may be lost in transcript-based systems. To this end, we present KIT's submission to this years BeTraC challenge in the lightweight track. Our main contribution is a scalable data augmentation pipeline that unifies heterogeneous medical dialogue datasets through synthetic speech generation and automatically generated SOAP supervision, enabling robust adaptation of a speech foundation model for end-to-end speech-to-SOAP generation.
https://arxiv.org/abs/2608.24327
Unsupervised anomaly detection (UAD) aims to localize abnormal regions in medical scans without pixel-level annotations. A typical strategy seeks to reconstruct a pseudo-healthy image that preserves subject-specific anatomy. Recently, diffusion models have been proposed to perform UAD. However, these methods rely on heuristic noise schedules or synthetic corruptions to balance subject-specificity and anomaly removal. In this work, we propose an alternative formulation of UAD as a Bayesian inverse problem under a diffusion prior. First, we introduce a latent spatial anomaly mask that models pixel-wise consistency between a test image and its latent corresponding pseudo-healthy image. Then, we propose an approximation of the unknown generation process that links healthy anatomy, anomalies, and the observed image, enabling a well-defined likelihood within the Bayesian framework. Building on recent advances in diffusion-based inverse problem methods, we jointly infer the pseudo-healthy image and the anomaly mask via annealed posterior sampling. We evaluate our approach on FDG PET (ADNI) and FLAIR MRI (BraTS 2021), demonstrating improved anomaly localization performance compared to other diffusion-based approaches and validating the contribution of our introduced model. Our code is available at this https URL.
https://arxiv.org/abs/2609.24265
Automated biomedical evidence synthesis depends on retrieving published studies, but the biomedical literature is systematically skewed toward positive findings. Deeper retrieval can therefore make a system \emph{more} likely to falsely infer benefit when the true effect is null. We formalise this phenomenon as \emph{evidence drift} and prove that, under a standard publication-bias model, the false-positive probability on null-effect queries follows a strictly increasing large-sample envelope in retrieval depth, approaching one. Empirically, on a held-out test set of 140 Cochrane-derived queries, drift rises monotonically from 7.9\% to 15.7\% as the retrieval budget grows from 3 to 20 steps, and concentrates in the null-effect class. We present DACG-agent, a drift-aware causal-graph agent that incrementally builds a causal knowledge graph from PubMed abstracts and applies a two-layer stopping policy with complementary roles: a KL-divergence monitor that detects posterior convergence (the accuracy layer), and a Bradley--Terry process reward model (PRM) whose online decline detection halts retrieval once evidence quality peaks (the efficiency layer). Against full-budget retrieval, DACG-agent reduces evidence drift from 15.7\% to 6.4\% and improves null-effect accuracy by 21 percentage points (40.0\%$\to$61.4\%) while using 67\% fewer retrieval steps; overall accuracy rises from 61.4\% to 69.3\% (95\% CI 61--77). A simulation confirms the drift result transfers from the analysed vote-counting aggregator to the deployed noisy-OR one.
https://arxiv.org/abs/2609.24101
Body-cue recognition can support assistive robots, but benchmark accuracy does not guarantee reliable behavior under a robot-camera viewpoint. We present Nuni, a bedside robot prototype that treats a detected distress cue as a reason to ask rather than a reason to alert. We compare two X3D-UGT RGB appearance classifiers, which reach 97.7% and 94.8% six-way accuracy on NTU RGB+D, with a pose-centric hybrid pipeline on 28 single-actor scripted clips recorded from the robot camera. The hybrid path achieved 0.71 six-way macro recall, versus 0.25 and 0.29 for the fine-tuned and from-scratch RGB variants. More importantly for interaction, it produced a question-triggering distress cue in 12/16 distress clips and would have prompted unnecessarily in 2/8 normal clips; the RGB variants yielded a question-triggering cue in only 2/16 and 3/16 distress clips. We separately tested the question-first controller through event injection. All 13 state-transition trials passed: valid responses caused stand-down, two unanswered prompts produced one alert, and three boundary conditions were handled correctly. These results are a preliminary technical evaluation, not a user study or medical validation, but they show how interaction policy can limit the consequences of uncertain perception.
https://arxiv.org/abs/2609.24099
Medical image interpretation is central to diagnosis and care, yet adapting general-purpose multimodal large language models (MLLMs) often requires resource-intensive domain-specific fine-tuning. Here we introduce representation-guided in-context learning (RG-ICL), a training-free inference framework that retrieves query-aligned demonstrations using frozen encoders, without task-specific parameter updates. Across eight datasets spanning histopathology, radiology and retinal fundoscopy, RG-ICL improved classification (mean gain 20 percentage points) and visual question answering (VQA) (mean gain 13 percentage points) over no-context and conventional ICL, approaching or exceeding training-based comparators. Which cases were retrieved mattered more than how many: 6 query-aligned cases outperformed up to 32 randomly selected ones, whereas fixed or random cases often reduced accuracy below baseline. For VQA, aligning reference cases with both image content and question intent produced further gains. These findings indicate that for medical image interpretation, curating which reference cases an MLLM sees is a practical alternative to retraining it.
https://arxiv.org/abs/2609.24057
Two transformative classes of AI systems are reshaping how organizations operate: \textit{digital AI}, which reasons over enterprise knowledge to power chatbots and agent workflows; and \textit{physical AI}, which learns to control robots and autonomous systems from video, gameplay, and sensor telemetry. Both face the same foundational bottleneck: raw knowledge at scale, spanning heterogeneous modalities, locked in private corpora that existing AI infrastructure cannot access reliably or efficiently. We propose \textit{Universal Knowledge Perception (UniK)} as a common platform for both classes, covering the full knowledge lifecycle (ingestion, enrichment, indexing, retrieval, and continuous evaluation) across modalities from rich text and video to molecular data and sensor telemetry. We present UniK, built on Polymath Retrieval (multi-index fusion over automatically enriched indices) with no task-specific fine-tuning. Across five digital AI domains (medical literature, open-domain QA, chemistry, legal video proceedings, and government open data) UniK combined with an open-source 70-billion-parameter model consistently matches or outperforms frontier proprietary LLMs that are orders of magnitude larger: 76\% RAG accuracy on government data versus 47\% for GPT-5; 77.9\% on medical QA without fine-tuning; topping all open-source chemistry pipelines. We show that the same infrastructure directly addresses the data curation, indexing, and retrieval challenges facing physical AI world model training, where the knowledge problem is harder but structurally identical.
https://arxiv.org/abs/2609.23971
Multimodal Large Language Models (MLLMs) commonly reuse visual encoders pretrained with CLIP, although the features of these ViTs are ultimately consumed by autoregressive LLMs. We refer to this mismatch as the semantic-interface gap and introduce MedMLIP, a framework that pretrains the visual encoder through report generation with a frozen LLM, while employing Local Relational Distillation (LRD) to preserve relationships among visual patches to avoid visual collapse. We pretrain MedMLIP on IU-Xray and Open-PMC-300K and evaluate the resulting encoders on VQA-RAD and SLAKE. Only the ViT is transferred, while the guiding LLM and projector are replaced, allowing us to assess cross-LLM transferability. Our cross-LLM transfer experiments demonstrate the value of pretraining visual encoders for their autoregressive LLM interface while trying to preserve more fine-grained visual information. Code and the pretrained model are available at this https URL
https://arxiv.org/abs/2609.23860
Medical image segmentation models typically rely on large amounts of densely annotated volumetric data, limiting their scalability across tasks and imaging modalities. This work addresses the challenge of predicting entire 3D anatomical structures from extreme annotation sparsity. An annotation-efficient student-teacher framework is proposed for automatic 3D medical segmentation that requires only a set of point prompts on a single 2D slice per volume, as input. A foundation model serves as an offline teacher, utilizing the provided point prompts from the selected slice to full-volume pseudo-annotations alongside their corresponding spatial confidence scores prior to student training. To mitigate the error propagation of noisy pseudo-annotations, a task-specific 3D student network is trained using a confidence-aware optimization strategy. By leveraging the teacher's pre-computed confidence scores, this strategy explicitly excludes statically uncertain regions of the pseudo-annotations from the loss calculation, while simultaneously emphasizing regions with higher confidence. Evaluated on 3D cardiac MRI datasets, our framework outperforms state-of-the-art semi-supervised methods, improving segmentation performance by up to 43.6%. Furthermore, it drastically reduces the manual annotation burden to just a few positive point prompts per volume, while improving surface boundary precision by up to 14.7% over the teacher and successfully recovering up to 34.1% of the performance gap toward the fully supervised upper bound.
https://arxiv.org/abs/2609.23815
Generative adversarial networks (GANs) are increasingly used to augment medical imaging datasets, but synthetic images do not necessarily provide downstream classification benefits. This study investigates whether class-specific Deep Convolutional Generative Adversarial Network (DCGAN) augmentation improves brain tumor classification when the classifier and evaluation set are held constant. Experiments were conducted on 7,200 brain magnetic resonance imaging (MRI) scans across four classes: glioma, meningioma, pituitary tumor, and no tumor. For each class, 1,400 real images were used for training and 400 were reserved for testing. A baseline Swin Transformer classifier was trained using only the real training images and compared with a second model trained using the same real images augmented with 500 DCGAN-generated images per class. Both conditions were evaluated on the identical held-out test set. The two models achieved the same overall accuracy of 96%, while macro F1 remained effectively unchanged and ROC-AUC decreased slightly from 0.987 to 0.982 after augmentation. Class-level analysis showed small redistributions in errors rather than a consistent performance gain. FID values between real and synthetic images ranged from 209.15 to 314.27, indicating substantial distributional differences under the adopted evaluation setup. These results suggest that synthetic augmentation should not be assumed to improve medical image classification and should instead be evaluated for both distributional fidelity and downstream task utility.
https://arxiv.org/abs/2609.28508