Knowledge_Graph
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RENSA: Rich Environment Metadata to Navigate Shared and Distributed Endpoints for Automated Federated SPARQL Query Generation
2026-08-29 00:32:13Victor Eiti Yamamoto, Takeda Hideaki, Yamamoto YasunoriAbstract
The number of knowledge graph databases has increased significantly with the proliferation of knowledge graph technologies. Knowledge graphs enable the dynamic integration of distributed data through federated SPARQL queries. However, constructing efficient queries in a federated environment is challenging due to the lack of detailed structural knowledge across decentralized datasets. While standards like VoID provide basic metadata, they often fail to capture the complex interlinks and authority distributions necessary for optimization. Consequently, current engines frequently rely on runtime ASK queries for source selection, increasing communication overhead. We propose RENSA, a federated SPARQL query generation framework that leverages an extension of SPARQL Builder Metadata (SBM). By integrating class and authority information, mapping subject and object usage to specific predicates, RENSA enables precise source selection and semantic constraint inference for query variables without runtime communication. The generated profiles represent less than 1\% of the original dataset triples in most cases, ensuring storage efficiency. Evaluation on the LargeRDFBench benchmark (13 datasets with >1B triples, 32 queries) shows that RENSA achieves source selection results comparable to state-of-the-art methods while eliminating ASK query overhead. Furthermore, we demonstrate that RENSA infers class and authority constraints for query variables, enabling the identification of data sources even across heterogeneous endpoints. These profiles additionally offer human-readable structural insights for semi-automated query generation.
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URL
https://arxiv.org/abs/2608.28963
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BEACON: Behavior-Anchored Cross-Source Knowledge Graph Construction for Cyber Threat Intelligence
2026-08-28 14:49:46Changze Li, Yutong Cheng, Tsania Camila Finnisa, Qian Cui, Wei Ding, Peng GaoAbstract
Cyber threat intelligence (CTI) is foundational to modern cyber defense, yet much of it resides in unstructured reports whose volume and heterogeneity far exceed manual analysis, motivating research on automatically constructing knowledge graphs from CTI reports. However, existing approaches mainly extract partial information within a single report, leaving the cross-source setting unexplored, where the same threat is given unrelated names. Our key insight is that attack behaviors, once mapped to MITRE ATT&CK (a standardized catalog of attack techniques), can anchor the rest of a report. Attack behaviors are the adversarial actions a report describes, while contextual entities (e.g., threat actors, campaigns, and affected products) and Indicators of Compromise (IoCs; e.g., IP addresses) are their participants and traces. Attaching them to these anchors places every per-report graph in one canonical space. We realize this insight in BEACON, an LLM-driven framework for cross-source CTI knowledge graph construction. Its first stage extracts each report into a graph under a propose-then-verify paradigm, grounding candidates in report evidence and official ATT&CK definitions, to suppress LLM misclassification and hallucination. Its second stage merges these graphs with a hierarchical alignment strategy that applies signals in decreasing order of determinism, from character-level and semantic similarity to overlapping technique neighborhoods, iterating as merges pool neighborhoods. No existing benchmark links entities to technique anchors or provides cross-source alignment ground truth. We therefore construct and release two human-annotated datasets from 34 sources: to our knowledge the largest for report-level CTI extraction (8,395 elements) and the first for cross-source consolidation (3,487). On them, BEACON outperforms all baselines by at least 23% and 9%, respectively.
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https://arxiv.org/abs/2608.28394
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C-Unseen: Weak Signal Detection in Dynamic Temporal Knowledge Graphs via LLM Reasoning
2026-08-27 09:33:51Yassir Lairgi, Ludovic Moncla, Khalid Benabdeslem, R\'emy Cazabet, Pierre Cl\'eauAbstract
Weak signals are early, low-visibility indicators that precede significant changes before those changes become established. Existing detection methods, based on keyword frequency, topic modeling, or untyped graph topology, fail to capture the semantic and relational structure through which such signals manifest. In this paper, we propose C-Unseen, a self-interpretable framework for weak signal detection in Dynamic Temporal Knowledge Graphs (DTKGs). We define a weak signal as a rare, semantically coherent subgraph that proliferates across consecutive TKG snapshots. The framework operates through two modules: a Rare Subgraphs Extractor, in which an LLM identifies subgraphs whose content is in tension with the dominant snapshot narrative via chain-of-thought reasoning, and a Weak Signal Alerter, in which the persistence of these rare subgraphs is tracked across time steps to isolate true weak signals. Experimental results demonstrate that C-Unseen outperforms keyword-, topic-, and graph-based baselines.
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https://arxiv.org/abs/2608.26870
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SymbolLKG: Towards Verifiable Logical Reasoning via Logical Knowledge Graph and Symbolic Solvers
2026-08-27 09:06:52Haizhao Fan, Yuchi Xiong, Jize Wang, Xinping Guan, Xinyi LeAbstract
Large Language Models (LLMs) have demonstrated remarkable proficiency in natural language understanding, yet they struggle with strict multi-step reasoning, frequently suffering from hallucinations and inconsistency. Existing solutions like Chain-of-Thought (CoT) lack rigorous verification mechanisms, while standard Retrieval-Augmented Generation (RAG) often misses the complex, structural dependencies inherent in logical tasks. To bridge this gap, we propose a Neuro-Symbolic architecture that integrates a Logical Knowledge Graph (LKG) with dynamic solver routing. Specifically, we introduce an ontology-based LKG that treats logical rules and constraints as first-class topological nodes, enabling explicit modeling of dependencies extracted from text. We further design a Logic Router to dynamically dispatch tasks to the optimal symbolic engine, which is supported by a topology-aware hybrid retrieval mechanism. Experimental results on logical reasoning benchmarks demonstrate that our framework significantly outperforms state-of-the-art prompting and RAG baselines, delivering higher accuracy and verifiable reasoning paths.
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https://arxiv.org/abs/2608.26836
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Surgical Alignment in Knowledge Graph Training for Clinical Diagnosis with Large Language Models
2026-08-27 03:57:52Saksham Khatwani, He Cheng, Majid Afshar, Dmitriy Dligach, Yanjun GaoAbstract
Biomedical knowledge graphs (KGs) offer structured medical knowledge that can ground large language model (LLM) reasoning in clinical diagnosis application, yet how KG signal should be integrated into LLMs remains an open question. We present a systematic study spanning five KG task formulations, three training paradigms, two KGs, and three base LLMs. At the task level, all paradigms improve over the non-finetuned baseline, but methods with comparable in-domain accuracy show substantially different knowledge transfer behavior. We introduce Gradient Intervention Density (GID) and Gradient Distortion (GD) to measure how broadly an optimizer modifies the pretrained model. GID and GD together reveal a clear divide: KG-judgment training under KL regularization produces sparse, localized updates (a regime we term as surgical alignment), while task-specific SFT produces dense ones. A controlled ablation shows that the objective and KL contribute to sparsity independently, and the paradigms that produce sparse updates also improve reasoning quality, even when their in-domain accuracy is lower than task-specific SFT. Assessing KG-LLM integration thus requires complementing accuracy with optimization-geometry diagnostics. Our implementation can be found at this https URL.
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https://arxiv.org/abs/2608.26587
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MyoMechanix: Biomechanically-Grounded Compositional Skilled Activity Understanding and Coaching
2026-08-26 17:56:33Hao Yin, Paritosh Parmar, Lijun Gu, Lin Xu, Tianxiao Guo, Xiujin Liu, Tianyou Zheng, Yang Zhang, Weiwei FuAbstract
Existing action quality assessment (AQA) datasets and methods rely primarily on visual inputs such as RGB and pose, overlooking physiological dynamics such as muscle mechanics and often modeling actions as monolithic patterns. These limitations hinder fine-grained, biomechanically grounded feedback. We introduce MyoMechanix, a multimodal ecosystem for weight-loaded actions that aligns motion with muscle activity. Expert-annotated, it contains 7,500+ samples of 20 actions from 38 subjects, with synchronized multiview RGB video, 3D pose, sEMG, and additional physiological signals, forming the largest multimodal AQA benchmark to date. We further construct the Fitness Knowledge Graph (FKG), which organizes expert annotations into structured relationships among actions, phases, key steps, errors, and corrective feedback, enabling compositional scoring and interpretable assessment. Building on these representations, we develop CUBIST (Compositional Ontological Reasoning Engine), which performs decomposition-analysis-recomposition for fine-grained error attribution and feedback generation. We also establish MyoMechanix-AQA, MyoMechanix-VideoQA, and a novel MyoMechanix-Video2EMG task. Experiments show that multimodal sensing and structured representations improve performance, interpretability, and error attribution, with CUBIST achieving state-of-the-art results; VideoQA enhances language-grounded action understanding; and Video2EMG suggests video-based alternatives to costly EMG sensing. MyoMechanix advances skilled activity understanding toward biomechanically grounded, multimodal, and compositional reasoning for Physical AI applications in fitness, rehabilitation, healthcare, and machine learning. Project page: this https URL
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URL
https://arxiv.org/abs/2608.26094
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Query-Side Attacks on GNN-Based KGQA: Tracing Failures from Entity Linking to Answer Generation
2026-08-26 15:34:29Pankaj Kumar, Subhankar MishraAbstract
GNN-based Knowledge Graph Question Answering (KGQA) pipelines process queries through four discrete stages: entity linking, subgraph retrieval, GNN reasoning, and answer generation. Standard robustness evaluations conflate stage-level failures into a single end-to-end metric, obscuring both the source of brittleness and the appropriate mitigation target. We ask which stage fails, and why, when the pipeline is subjected to adversarial perturbations on the input question. We introduce a stage-isolation protocol with two answer-preserving adversarial perturbations verified against the knowledge graph: Compositional Restructuring (CR) and Relation Synonym Swap (RS) target distinct stages while leaving entity seeds intact. Evaluated across ComplexWebQuestions and WebQSP, the results run counter to prevailing assumptions: the GNN reasoning stage retains near-baseline accuracy when the subgraph is intact, while subgraph construction accounts for over 99\% of the end-to-end collapse under CR, occurring even when the gold answer is present in 74\% of retrieved subgraphs. This exposes a fundamental distinction between answer presence and answer reachability that end-to-end metrics cannot detect, and places the mitigation target firmly at the subgraph construction stage rather than the reasoning model. Perturbed datasets and evaluation infrastructure are released at this https URL .
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https://arxiv.org/abs/2608.25922
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A Storage-Retrieval Gap in Parametric Knowledge Graph Memory
2026-08-26 08:02:00Martino M. L. Pulici, Cuong Xuan Chu, Evgeny Kharlamov, Volker TrespAbstract
Graph retrieval-augmented generation places retrieved subgraphs into the model's context window at query time, paying a recurring token cost and exposing source data on every call. We study an alternative: compiling a knowledge graph offline into a bank of LoRA adapters, one per entity, that serve as a parametric knowledge layer queried by injecting weights rather than text, at zero query-time context cost. On the MetaQA dataset, we find that subgraph-trained adapters encode context-free factual knowledge that generalizes to unseen questions: on single-valued relations the adapter gains $+0.243$ exact-match score over a base model that is nearly blind closed-book ($0.007$), and only the correct adapter recovers this knowledge (an oracle gap of $+0.283$ over the base model). However, the stored knowledge is not recoverable by similarity: given a query with no subgraph, embedding-based and weight-space geometry retrieval both perform at chance, because a semantically neighbouring entity's adapter does not contain the answer - knowledge is stored locally and does not transfer. Weight geometry correlates with subgraph semantics ($\rho = +0.329$) but not with functional retrievability. We quantify the byte and context-token costs against graph retrieval-augmented generation and discuss deployment implications. Our results establish that parametric knowledge graph memory is feasible for storing knowledge, and identify selecting and composing the right adapters by a mechanism other than semantic similarity as the central open problem - motivating a learned, query-conditioned composition mechanism.
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URL
https://arxiv.org/abs/2608.25489
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SelfGraphRAG: Bridging the Supervision Gap in Graph-Based RAG with Synthetic QA Generation
2026-08-25 20:18:05Ben Lagnese, Manas GaurAbstract
Retrieval-augmented generation (RAG) improves large language models by incorporating external knowledge without retraining, but existing methods often underuse the relational structure encoded in knowledge graphs. Graph-based RAG can capture entity relationships, yet supervised graph retrieval typically requires labeled question-answer data that may not be available for newly constructed graphs. We address this limitation with SelfGraphRAG, a framework that generates question-answer pairs directly from knowledge graph structure and uses them to train a query-conditioned graph retriever. The generated questions capture multi-hop paths and local neighborhoods, providing relational supervision without manual annotation. Experiments on multi-hop question answering and classification benchmarks show that SelfGraphRAG improves retrieval precision and downstream reasoning performance over embedding-based baselines. These results suggest that knowledge graph structure can provide useful supervision for training graph retrievers when labeled data are unavailable.
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https://arxiv.org/abs/2608.25123
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FedV-KGQA: Multi-Hop Question Answering over Vertically Partitioned Knowledge Graphs
2026-08-25 17:34:27Md Saikat Islam Khan Bappy, Oshani SeneviratneAbstract
Real-world data for knowledge graph question answering is often distributed across different organizations due to governance and data sovereignty constraints. While centralized systems exist, they cannot answer multi-hop questions when the required facts are split across vertically partitioned silos. In this paper, we propose FedV-KGQA, a framework for multi-hop reasoning over knowledge graphs in which organizations share entities but own disjoint sets of relations. Our approach combines local graph enrichment and knowledge graph embeddings to ensure raw triples and relation parameters never leave each silo, establishing a structural data boundary without requiring centralized graph access. We further introduce a topic entity anchoring mechanism that grounds questions in the correct graph neighborhood without any runtime inter-silo communication. We evaluate 12 model configurations across three benchmarks and show that FedV-KGQA performs strongly, remains close to centralized performance, generalizes to 3-hop reasoning, and is robust to embedding perturbations.
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URL
https://arxiv.org/abs/2608.24846
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Constrained Entity Selection under Partial Knowledge for LLM-Based Knowledge Graph QA
2026-08-25 17:04:32Emanuel KitzelmannAbstract
Large language models are increasingly used for knowledge graph question answering (KGQA), but can fail to correctly ground answers in the underlying graph. Current approaches to LLM-based KGQA either rely on full semantic parsing into executable queries such as SPARQL, which is brittle in practice due to complex schemas or incompleteness of real-world KGs, or on LLM-reasoning and answer generation over KGs, which can be more robust but lacks formal guarantees. In this work, we study a complementary setting in which \emph{candidate} answers are generated by an LLM-based system and subsequently verified using lightweight symbolic constraints derived from the question. We introduce \emph{Constrained Entity Selection under Partial Knowledge (CES-PK)}, a problem formulation that focuses on eliminating invalid answers and providing symbolic support for valid ones without requiring construction of executable logical forms. To account for incomplete KGs, we employ a three-valued constraint semantics (\emph{satisfied, violated, unknown}) that avoids incorrect rejections under open-world assumptions. To demonstrate the effects of our method, we instantiate this framework over the Hetionet biomedical knowledge graph and evaluate the impact of type, relation, and exclusion constraints. Experiments show that precision improves by filtering invalid candidates, while recall is preserved due to retaining candidates whose constraints are not explicitly violated. Satisfied constraints provide additional positive symbolic evidence to rank remaining candidates.
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https://arxiv.org/abs/2608.24824
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Clinical Knowledge Graphs for Chest X-Ray Device Reasoning
2026-08-25 14:57:50Harshil LodhiyaAbstract
Chest radiographs are routinely used to verify the position of catheters, tubes, and other support devices. Existing image models often return labels or segmentations, while report-processing systems structure text without access to image geometry. We present an uncertainty-aware clinical knowledge graph that represents device instances, tip estimates, placement assessments, provenance, report events, and temporal links as separate but connected evidence. We evaluate the implemented visual graph layer using saved predictions from the complete RANZCR CLiP test archive, comprising 30,083 studies from 3,255 patients across five non-overlapping outer folds. The graph builder materializes 914,632 B7 evidence nodes and 884,549 typed relationships. All 118,647 B7 predicted-device nodes retain tip covariance, placement probabilities, fragment provenance, and fragment counts, whereas the direct B2 baseline retains none of these fields. We further define typed data contracts, uncertainty representations, abstention rules, report-image grounding, and longitudinal query mechanisms for extending the graph to report-bearing cohorts. The reported graph-materialization analysis is post-hoc descriptive and does not establish report grounding, longitudinal performance, or clinical utility. It demonstrates a reproducible foundation for evidence-preserving AI reasoning over chest X-ray device assessments.
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https://arxiv.org/abs/2609.29536
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COCI: Conference Organisers and Content Identifier
2026-08-25 13:43:53Angelo Salatino, Francesco Osborne, Alexis Vizcaino, Aliaksandr Birukou, Enrico MottaAbstract
Despite the critical role of grey literature in scholarly communication, artefacts such as Calls for Papers (CfPs) remain largely isolated from modern Scholarly Knowledge Graphs. The unstructured and highly heterogeneous nature of these documents has traditionally hindered their large-scale processing. In this demo paper, we present the Conference Organisers and Content Identifier (COCI), an AI-based framework designed to extract fine-grained, structured metadata from raw CfP texts. COCI employs a multi-stage pipeline that combines Large Language Models (LLMs) with semantic mapping techniques to integrate extracted entities with established knowledge bases, including OpenAlex, DBLP, TIB ConfIDent, and the AIDA Dashboard. By disambiguating authors and semantically aligning topics and conference series, COCI bridges the gap between informal scholarly dissemination and structured Semantic Web resources, laying the foundation for systematic analysis of non-publisher-based academic events.
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URL
https://arxiv.org/abs/2608.24559
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Neurosymbolic Alignment for Physiologically-Safe Clinical Language Models
2026-08-25 13:20:03Abdulhady Abas Abdullah, Erik Cambria, Milena ZivkovicAbstract
Clinical LLMs can generate recommendations that are factually plausible yet physiologically unsafe. We investigate whether safety alignment can be improved by grounding preference optimization in structured physiological knowledge rather than text-only supervision. Methods: We propose Neurosymbolic Alignment, a training-time framework that couples a 7B clinical LLM with an HGNN-based Physiological World Model over an 847K-node biomedical knowledge graph. Candidate responses are scored using homeostatic constraints, multi-hop path plausibility, and drug-interaction penalties, and the resulting rankings drive iterative on-policy ORPO updates. Evaluation is performed on the Clinical Safety Benchmark (CSB), a 2,500-scenario benchmark for physiological constraint violations in generative clinical reasoning. Results: Relative to ORPO, the proposed method improves CSS from 69.5% to 90.8% (+21.3 pp), reduces physician-evaluated HR from 14.1% to 5.1% on the blinded subset, and improves DID from 72.8% to 91.6%. These gains are corroborated by an HGNN-independent Rule-Engine Safety Score (RSS: 86.4%, +21.2 pp over ORPO; r=0.97 concordance with CSS). The method also exceeds GPT-4 (5-shot) on all safety metrics despite a 10x parameter disadvantage, and outperforms an inference-time self-correction pipeline (SFT+SelfCorrect) by 11.4 pp CSS. Under synthetic EHR-style noise, 84.2% CSS is retained. Ablation analysis shows that HGNN scoring (-16.2 pp) and iterative training (-11.5 pp) are the dominant contributors. PhysioScore calibration against 200 clinician labels yielded ECE = 0.038 and kappa = 0.91. Conclusion: Training-time physiological grounding produces measurable and independently verifiable safety improvements in open-weight clinical LLMs under controlled evaluation. External validation on real clinical data is required to determine whether these gains transfer to deployment settings
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URL
https://arxiv.org/abs/2608.24534
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Matched Excess-Outranker Regularization for Candidate-Set Interference in Continual Knowledge Graph Embedding
2026-08-25 09:01:14Hao Ren, Junbin Gao, Jiaojiao JiangAbstract
Continual knowledge graph embedding updates entity and relation representations as a graph grows. Existing methods primarily address catastrophic forgetting, but entity admission also changes the candidate universe of every compatible query. A historical answer can therefore lose rank even when its score and its ordering among old entities are preserved. We formalize this effect as candidate-set interference and introduce Matched Excess-Outranker Regularization (MEOR), a host-level objective that compares smooth answer-relative newcomer pressure with score-blind, structurally matched old references. Its one-sided penalty acts only when newcomer competition exceeds the matched reference, preserving the host learner's signal for legitimate new entities. Across eight paired runs on ENTITY-ComplEx, MEOR improves historical current-universe mean reciprocal rank (MRR) by 0.0057 over replay and reduces candidate-set interference by 0.0055, with one-sided 95% lower bounds of 0.0052 and 0.0051, respectively. It satisfies the preservation criteria for old-universe ranking and newcomer acquisition and improves historical current-universe MRR over persistent calibration, matched maximum regularizer (MMR), and unmatched old regularizer (UOR). Direct ablations support each component of its reference construction and aggregation. Adding MEOR also improves historical ranking in all ten reported FBInc-S and FBInc-L host and backbone settings, with every paired 95% confidence interval excluding zero. These results establish candidate admission as a distinct source of continual rank loss and show that it can be controlled without replacing the underlying embedding architecture or continual learner.
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URL
https://arxiv.org/abs/2608.24273
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Graph-Supervised Hierarchical Clinical Alignment for Radiology Report Generation with Large Language Models
2026-08-25 06:32:26Yingshu Li, Yunyi Liu, Zhanyu Wang, Zailong Chen, Lingqiao Liu, Lei Wang, Luping ZhouAbstract
Radiology report generation (RRG) has recently benefited from large language models, which substantially improve report fluency. However, clinically faithful generation remains challenging because current supervision is still imposed mostly at the report level. This creates a granularity mismatch: radiology reports are composed of disease-grounded findings, while existing methods are trained mainly with whole-report objectives. To address this problem, we propose Graph-Supervised Hierarchical Clinical Alignment, which reformulates image-report supervision as a hierarchical clinical alignment problem. Our method structures this alignment as a disease-conditioned process, where supervision is decomposed into two levels: Disease-Centric Alignment for fine-grained disease-specific correspondence, and Global Clinical Semantic Alignment for report-level semantic coherence. A clinical knowledge graph is used as a training-time-only structural prior that defines disease-specific supervision units and their clinical relationships, introducing no additional overhead at inference. Because standard contrastive alignment could produce false negatives when studies share overlapping pathologies, we combine instance-conditioned discriminative matching with disease-conditioned soft regularization, enabling fine-grained yet clinically consistent cross-modal representations. Experiments on MIMIC-CXR, IU-Xray, and COV-CTR show that our method consistently improves performance on both conventional and clinical metrics. Notably, our 3B model surpasses several prior systems with larger 7B/13B backbones, suggesting that improving supervision structure, rather than increasing model size, can be more effective for RRG.
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URL
https://arxiv.org/abs/2608.24121
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Cross-Domain, Multi-Task Data-to-Text Generation without In-Domain Training Data
2026-08-24 15:37:19Yifei Song, Kun Efimov-Zhang, Claire GardentAbstract
Structured data exists in many forms (tables, knowledge graphs, charts, and time series), and converting it into text may involve different generation tasks. However, most prior work on data-to-text (D2T) generation has focused on specific tasks and datasets, relying either on task-specific training data or on the zero-shot capabilities of large language models. We study cross-domain D2T generation in a setting where neither in-domain training text nor test references are available, and where domains, generation goals, and input structures vary substantially. We compare data-driven knowledge distillation (DDKD) against zero-shot inference and fine-tuning on out-of-domain D2T data, and introduce structure-preserving augmentation via structural subsampling and perturbation. Experiments on five benchmarks show that, at constant model size (1.7B parameters), DDKD consistently outperforms both fine-tuning and zero-shot inference. Moreover, the resulting small models outperform a much larger finetuned model on two of the five domains, achieving comparable performance on the remaining three. We further construct QUINTD-5, a fivefold extension of QUINTD-1, and show that simply scaling real target-domain inputs yields only modest gains, whereas our augmentation strategy remains more effective and more cost-efficient for cross-domain distillation.
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URL
https://arxiv.org/abs/2608.23391
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Walking on the DARKSIDE
2026-08-24 15:17:58Aldo Gangemi, Emanuele BottazziAbstract
Large Language Models (LLMs) recognise patterns but do not natively track the path of exclusions that a coherent discourse demands. When an input rests on a fabricated authority, a misapplied mechanism, or a surreptitious analogy, an unsteered LLM tends to engage with it as if it were grounded, and to reify the misstep into any structured output it generates. Logic-Augmented Generation (LAG) with POLANYI++, an LLM-steering method that uses heuristics, ontologies and problem solving methods for tacit knowledge extraction, produces an Extended Knowledge Graph (XKG) in OWL2, but inherits the same vulnerability: a sophisticated nonsensical input is reified into the graph alongside the legitimate triples, and is hardly detectable by automated reasoners since the XKG is generated jointly with the wrong assumptions. We introduce DARKSIDE, a coherence auditing method on top of POLANYI++. It formalises the trail as an explicit data structure of accumulated exclusions over discourse time, complemented by a warrant axis that classifies each named referent as Warranted, Unattested, Misattributed or Fabricated, with an escalation rule that pushes the DelegationRiskAssessment to UNSAFE when the fabricated rate is positive or the unsupported rate exceeds a threshold. We evaluate DARKSIDE as a steering layer over a Gemini 3 on BSBench, a 100-item adversarial corpus of sophisticated-sounding nonsense across software engineering, finance, healthcare, physics and law, with Claude Sonnet 4.6 as an independent judge. The empirical evidence supports an architectural claim: when an LLM forward pass is wrapped in an ontology-mediated negative-trail apparatus, the structural pattern-vs-path gap can be partially scaffolded. The XKG functions as the missing memory, and the warrant axis as an epistemic firewall.
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https://arxiv.org/abs/2608.23370
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Automated Construction of FAIR Digital Object Knowledge Graphs from Flat Cultural Heritage Records
2026-08-24 13:51:39Zeyd Boukhers, Lingxiao Kong, Xenophon Zabulis, Georgios ToubekisAbstract
The FAIR Digital Object (FDO) framework mandates that metadata attribute values be expressed as persistent identifiers (PIDs) wherever possible, to produce a fully machine-actionable graph in which every reference is resolvable. The Europeana Data Model was designed long before the FDO specification, and it stores most metadata values as plain text. This serves human browsing well enough, but gives an automated agent nothing to follow across records or collections. We present a pipeline that transforms flat Europeana records into an FDO-compliant knowledge graph structured with CIDOC-CRM. Following the FDO specification, we model every heritage entity as a discrete FDO with its own PID, type, profile, and metadata layer. The core technical challenge is automating the FDO-prescribed distinction between values that must become PID references (resolvable entities) and those that may remain literals (terminal leaves such as notes, measurements, and dates). We address this with a large language model that classifies each metadata value, routes it to a controlled vocabulary (Getty AAT, Wikidata, VIAF, PeriodO), and links it to a shared entity FDO. We evaluate using 637 archaeological records from five Europeana providers, processing each with the LLM. The pipeline links 86% of metadata slots, resolving 58.5% of values Europeana had not already enriched. It also merges cross-lingual surface forms that byte-identical matching keeps apart, where 17 of 33 such merges are correct on manual review. Graph connectivity does not separate this from string matching; what distinguishes the FDO graph is that every node is typed and resolvable.
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https://arxiv.org/abs/2608.23263
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Aligning Biomedical Texts and Knowledge Graphs: A Systematic Comparison of Lightweight Alignment Strategies
2026-08-24 13:06:23Artem Bisliouk, Elizaveta Nosova, Heiko Paulheim, Andreea Iana, Rita T. SousaAbstract
Biomedical knowledge exists in two complementary but distinct forms: unstructured scientific literature and structured knowledge graphs (KGs). Aligning them is essential for knowledge grounding, evidence retrieval, and KG completion, yet existing methods do not explicitly align free-text evidence with KG triples. We present a unified framework for systematically studying design choices for aligning biomedical text and KGs. With a text encoder and a KG embedding model both frozen, we learn only a lightweight projection between their spaces via a contrastive objective. This enables a fair comparison across six design dimensions: text encoder, KG embedding model, projection head, triple composition, training direction, and hard-negatives sampling. We construct CTD-Align, a corpus of over 22K one-to-one tripledocument pairs linking chemical-gene interactions from the Comparative Toxicogenomics Database to supporting PubMed passages. We evaluate alignment on it in two retrieval settings: document-to-triple and triple-to-document. We find that the triple composition and the training direction (i.e., shared retrieval space) have the greatest impact, whereas the text encoder and hard-negatives sampling matter little. Overall, simple choices win: projecting text into the KG space with a linear head over concatenated subject, predicate, and object embeddings performs best. These findings establish lightweight contrastive alignment as an effective, practical foundation for bridging biomedical text and KGs.
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https://arxiv.org/abs/2608.23214
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