Knowledge Graphs (KGs) are increasingly constructed through automated extraction pipelines; however, such systems often introduce spurious or incomplete triples, which degrade downstream performance. Existing evaluation practices rely heavily on task-specific metrics or small-scale manual verification, offering limited insight into the structural and semantic fidelity of extracted graphs. We propose a novel, interpretable metric for intrinsic KG quality assessment that measures how closely an automatically extracted graph approximates an "ideal" graph capturing the key noun phrases, predicate relations, and basic linguistic phenomena such as negation expressed in the source text. Our framework integrates two complementary components: (1) an entity-level assessment that evaluates completeness, resolution quality, and connectivity, and (2) a relation-level assessment that judges predicate preservation and multiplicity using lexical similarity, dependency-parse alignment, and light-weight negation handling to ensure semantic faithfulness. We evaluate our metric across multiple state-of-the-art triple extraction systems and datasets, including WebNLG, TinyButMighty, and BenchIE, demonstrating that it reliably identifies omissions, redundancy, and structural deviations that existing metrics overlook. Our work offers a scalable, model-agnostic, and interpretable framework for comparing automated KG construction methods and provides a foundation for standardised evaluation. We further validate the metric through an ablation study isolating noun and verb components, and a downstream evaluation showing that KGCQual scores correlate significantly with link prediction performance on the same extracted KGs. The code repository is available at this https URL.
https://arxiv.org/abs/2607.10212
Knowledge graph foundation models such as Ultra and Trix achieve strong inductive transfer by learning relation-graph representations that generalise to unseen entities and relations. Extending this transferability to temporal knowledge graphs (TKGs) remains challenging: existing temporal models tie their parameters to dataset-specific entities, relations, or timestamps and are not designed to transfer to TKGs with disjoint vocabularies. We propose GRATE (Gated Rotary Attention for Temporal Encoding), an entity-side message function that adds no learnable parameters and encodes time through relative time differences by rotating each edge message according to its time gap to the query and applying a query-conditioned gate to select temporally relevant signals. GRATE integrates into NBFNet-style KG foundation models while preserving structural transferability. Existing TKG benchmarks evaluate within shared train/test vocabularies and cannot directly test cross-dataset temporal transfer; we therefore construct GDELTIndT and WIKIIndT, inductive transfer benchmark suites with disjoint entities, relations, and timestamps spanning both interpolation and extrapolation. Across these benchmarks and held-out forecasting datasets, a single jointly pretrained GRATE checkpoint improves over the static base model in most settings.
https://arxiv.org/abs/2607.10197
Pre-demolition assessment, the regulated audit process at the heart of urban mining, is an information process in which AI support must serve qualified auditors who remain accountable for the decisions taken. The relevant unit of value is not prediction accuracy alone, but the defensibility of the supported decisions: their legibility, plausibility, sourcing, and contestability. Explainable AI techniques and domain knowledge graphs each address parts of this requirement, and existing taxonomies have catalogued their integration. The literature is descriptively rich but structurally under-specified: what remains less developed is a structural account of why specific integrations produce artefacts neither resource can provide alone. This paper offers a complementarity-theoretic interpretation grounded in the IS resource-based tradition. We propose four consolidated KG-XAI integration modes (Lifting, Constraining, Typing, and Revising), each defined as a typed operation over XAI artefacts and knowledge-graph substrate structures. Each mode unlocks a distinct property of defensibility and contributes to the kind of regulatory artefact pre-demolition assessment demands. A fire-door example from the urban-mining process illustrates the modes using the W3C Linked Building Data stack and valuation extensions.
https://arxiv.org/abs/2607.09578
Legal precedent retrieval is a fundamental task in legal case preparation, planning, litigation strategy, and legal research. Current approaches for automatic precedent retrieval map legal documents to a low-dimensional semantic space and compute similarity based on the proximity of their representations. These approaches treat legal documents as monolithic texts, ignoring the rhetorical organization of the legal technicalities. Ergo, they overlook nuanced legal meanings and fail to distinguish the contextual significance of legal entities and concepts that vary based on their rhetorical roles within the document. To address this insufficiency, we propose the PRecG pipeline that computes the similarity between pairs of legal judgments by hierarchically learning their representations. The process begins by decomposing each document into distinct semantic units (segments) based on the rhetorical roles of sentences. For each rhetorical segment, a knowledge graph is constructed to capture the legal entities and their relationships within the segment. Contextual representations of the entities are then learned and aggregated to derive segment-level embeddings. These embeddings are further integrated to produce a unified document-level representation, and finally, the semantic similarity between a pair of documents is computed. We validate the performance of the proposed approach through extensive experiments on a benchmark Indian legal dataset, comparing it against state-of-the-art baselines to demonstrate its effectiveness.
https://arxiv.org/abs/2607.09094
Knowledge graphs (KGs) are often automatically constructed from large-scale corpora, but they inevitably contain factual errors due to noisy sources and extraction failures, and verifying them reliably at industrial scale remains a critical challenge. To address this, we propose AgentKGV, the Agentic LLM-RAG framework for KG fact Verification, that integrates dynamic routing and iterative query rewriting, which handles surface-form mismatch in document-level retrieval. To make this framework more accurate and cost-efficient for industrial deployment, we further introduce a two-stage training strategy: turn-level distillation-based SFT that transfers reasoning ability from a large teacher model into a small model for stable query rewriting and reasoning, and trajectory-level GRPO that optimizes the search policy to reduce unnecessary retrieval at scale. On the long-tail-predicate split of the open-domain T-REx benchmark, our framework improves macro-F1 over single-turn RAG by 5.5 \%p, and two-stage training does it further by 9.4 \%p. GRPO also cuts the average number of search calls from 3.24 to 1.63 without lowering accuracy.
https://arxiv.org/abs/2607.09092
In critical infrastructure, operational technology environments often cannot be actively scanned, and yet active system feedback is needed for risk assessment and compliance. This paper presents a non-invasive, MCP-grounded multi-agent pipeline that converts natural-language system descriptions into source-verified knowledge graph and audit-ready artifacts in the NIST OSCAL format for continuous automated compliance management. The architecture decouples LLM-based reasoning from deterministic knowledge retrieval against authoritative threat-intelligence sources, reducing the risk of fabricated vulnerabilities and hallucinated attack paths. In an evidence-based synthetic scenario of a water utility, the pipeline achieves 0.90 CVE recall and perfect D3FEND recall. It generates a schema-valid OSCAL System Security Plan and an OSCAL Security Assessment Report. Nevertheless, the core insight is not that grounding via MCP eliminates errors (e.g., hallucinations) entirely from the pipeline, but that it shifts errors into the first phase of asset extraction from the natural language description. Here, a single incorrectly extracted entity can lead to genuine but irrelevant CVEs in subsequent stages of the pipeline, which consumes time and resources. However, it makes the remaining risk visible, verifiable, and suitable for a time-efficient manual review, since the infrastructure (e.g., version numbers, OS, etc.) is typically known.
https://arxiv.org/abs/2607.08288
Logical Multi-Hop Query Answering over Knowledge Graphs (KGs) can be formulated as querying, with an implicit completeness assumption. Current works mainly focus on Existential First Order Logic (EFO) queries. These EFO queries contain conjunction, disjunction, and negation operators. Most existing works employ transductive reasoning, meaning they are not capable of reasoning over entities unseen during training. In the real world, there is a resource scarcity, and we cannot train a model with all the nodes of a large KG. Hence, we propose InductWave, a wavelet-based inductive embedding method for logical query answering on large KGs. Here, the training graph consists of fewer nodes than the test graph. Our model performs on par with the baseline models while having half the number of message-passing layers. It outperforms all of them in most cases, with 75% of the layers. These fewer resource requirements enable us to evaluate InductWave on massive graphs, such as Wiki-KG. We test our model using extensive experiments across varying train-test graph proportions of the FB15k-(237) dataset, comparing it with the state-of-the-art models. The code and datasets for the model are available at this https URL.
https://arxiv.org/abs/2607.07422
Ancient Indian medical texts like Sushruta Samhita have extensive information on diseases, treatments, and surgical techniques. Yet, their ancient format and use of intricate vocabulary pose difficulties in accessibility and systematic ordering. The research here utilizes Natural Language Processing (NLP) methods like Named Entity Recognition (NER), BERTopic modeling, and Knowledge Graph development in Neo4j to extract, categorize, and visualize important concepts based on translated versions. Thematic classification with BERTopic allows for the identification of the underlying medical topics, whereas NER supports the structured entity recognition of diseases, treatments, researchers, and medicinal plants. Graphbased network analysis with Neo4j also allows for the semantic representation of relationship among extracted entities, supporting knowledge retrieval and digital preservation. The findings illustrate how graph databases, topic modeling, and entity recognition facilitate the computational organization of Ayurveda's historical medical wisdom, closing the gap between the conventional texts and contemporary data-driven inquiry. The suggested method promotes historical text analysis, medical informatics, and digital humanities to make ancient Indian medical wisdom more accessible and understandable.
https://arxiv.org/abs/2608.28608
Multi-Modal Knowledge Graphs (MMKGs) enrich entities with multiple modalities such as text and images, yet entities with highly similar multi-modal features remain difficult to distinguish. Temporal information of an entity can serve as an additional modality to disambiguate such entities, but existing approaches rarely treat time as a separate modality alongside text and images due to two major challenges: (1) sparse temporal semantics, which hinder alignment with richer modalities, and (2) multiple timestamps, which introduce noise or reduce robustness in representation learning. To address these challenges, we propose Time Imprint, a framework that treats time as an entity-level modality and jointly aligns temporal, textual, and visual representations via a three-view contrastive objective. Additionally, to mitigate multi-timestamp ambiguity, Time Imprint studies a compact timestamp subset selection design space and aggregates the selected timestamps into a discriminative temporal embedding with attention pooling, balancing temporal specificity and robustness. Experiments on three MMKG benchmarks demonstrate that Time Imprint achieves state-of-the-art link prediction performance, improving Hits@1 by up to 6.07\% overall and yielding up to 58\% gains on the subset of the top-1\% ambiguity samples. We further examine different fusion strategies and the sensitivity to timestamp availability and quality, clarifying when and why time-as-modality is most beneficial, while adding only modest training overhead. We release our code at this https URL.
https://arxiv.org/abs/2607.09777
Multi-hop Question Answering over Knowledge Graphs faces a critical challenge: traditional retrieve-then-read pipelines break differentiability, preventing the retriever from learning to bridge the semantic gap where intermediate nodes lack lexical overlap with the query. To address this, we propose RSF-GLLM, a framework decoupling differentiable graph reasoning from answer generation. Our Recurrent Soft-Flow (RSF) module employs a GRU-guided query updater to propagate continuous relevance scores, utilizing a dynamic gating mechanism to traverse semantically dissimilar bridge nodes via structural cues. We introduce flow sparsity regularization to theoretically guarantee convergence from soft probabilities to discrete reasoning paths. These paths are extracted and textualized to fine-tune a Large Language Model (LLM), ensuring generation is grounded in factual topology. Experiments on WebQSP and CWQ demonstrate that RSF-GLLM achieves competitive performance with superior inference efficiency compared to LLM based computationally expensive approaches.
https://arxiv.org/abs/2607.06527
Building sensors are embedded in physical topology, spatial hierarchy, and operational context, yet existing forecasters often treat them as isolated time series or rely on fixed covariate sets. We present TopoBrick, a training-free framework for zero-shot building IoT (Internet-of-Things) forecasting. TopoBrick uses building knowledge graphs to construct a compact structural skeleton and employs an agentic topology sampler to select target-specific exogenous variables. The selected variables are organized by deployment-time availability, separating past-known sensor states from future-known calendar, schedule, and meteorological exogenous variables. Across three real-world buildings, TopoBrick outperforms strong zero-shot foundation-model baselines and remains competitive with fully trained building-specific models. Ablations show that topology-aware sampling is more reliable than random, ontology-only, or fixed-hop selection, especially for physically coupled HVAC and weather-driven sensing variables.
https://arxiv.org/abs/2607.06349
The integration of Large Language Models (LLMs) into scientific research workflows, particularly for bibliographic discovery and literature synthesis, raises significant methodological, epistemic and regulatory challenges for the Social Sciences and Humanities (SSH), especially with regard to disciplinary diversity, multilingual access to sources and the evaluation of results. This paper presents an on-going use case developed within the European project LLMs4EU and the ALT-EDIC infrastructure, aimed at adapting foundation models to SSH research practices and supporting tasks such as question answering, comparative document analysis and literature review. The evaluation framework follows the LLMs4EU protocol and encompasses both independent quantitative benchmarking (retrieval, summarisation, traceability and hallucination detection) and a qualitative assessment involving a panel of Digital Humanities experts. By embedding model adaptation within research infrastructures and a structured legal and ethical compliance framework, the use case explores how domain-sensitive and regulation-aware generative AI can support SSH scholarship while preserving reliability and epistemic responsibility.
https://arxiv.org/abs/2607.05956
Training multimodal search agents to perform multi-hop reasoning remains challenging due to a fundamental structural disconnect: existing pipelines construct training data, search environments, and reward signals independently, causing synthesized structural metadata to be discarded, environments to rely on irreproducible external engines, and RL rewards to remain sparse at the trajectory level. We present \textbf{SearchEyes}, which uses a typed knowledge graph as the backbone of a \emph{simulated search world} that unifies all three components. We propose \textbf{Perception-Knowledge Chains (PKC)} to sample constrained multi-hop paths over the visual-knowledge intersection of Wikidata5M, retaining hop-level entity metadata that simultaneously defines a self-contained search world and step-level reward anchors. We further propose \textbf{Hop-Anchored Policy Optimization (HaPO)}, which reuses these anchors for step-level credit assignment without a separately trained process reward model. Experiments on six multimodal knowledge-intensive benchmarks show that SearchEyes achieves state-of-the-art performance among open-source multimodal search agents, with SearchEyes-27B improving over the strongest open-source baseline by 6.2 points on average.%
https://arxiv.org/abs/2607.05943
Cyber Threat Intelligence (CTI) reports are predominantly unstructured, heterogeneous, and noisy, which limits their direct usability for automated analysis and reasoning. Cybersecurity Knowledge Graphs (CSKGs) provide a structured representation of adversarial entities, actions, and relations, but constructing such graphs from free-text CTI remains a challenge. Recent approaches rely on monolithic Large Language Models (LLMs) to perform end-to-end extraction and completion, leading to high cost, limited controllability, and unstable performance. This paper introduces TACTIC-KG, an agentic framework for CSKG construction that decomposes the task into modular, specialized LLM agents responsible for extraction, typing, verification, and curation. Using lightweight models (3B--8B), TACTIC-KG improves stability, recall, and graph consistency while reducing deployment cost. We implement and evaluate TACTIC-KG against recent state-of-the-art systems. Experiments on human-annotated CTI reports show that agent specialization consistently outperforms larger monolithic in-context-learning (ICL) baselines in extraction F1-score, typing accuracy, and structural graph similarity.
https://arxiv.org/abs/2607.05001
Adaptive retrieval promises to make knowledge-graph question answering more robust by letting a controller search, inspect neighborhoods, revise actions, and stop when evidence is sufficient. We study this premise by introducing TraceBound, a lightweight profile- and trace-conditioned diagnostic protocol for an ARK-style retriever on text-rich knowledge graphs. TraceBound exposes a compact query profile before retrieval, issues short trace hints after observable failure symptoms, and logs trajectory counters, while keeping graph data, tools, gold labels, and ranking metrics fixed. Across STaRK validation and held-out subsets, the added conditioning improves inspectability but consistently reduces retrieval quality under open-weight controllers. Paired trajectory analysis localizes the degradation to repeated calls, zero-result calls, and misallocated exploration budget, while stricter interaction budgets shorten trajectories without repairing the policy. The result diagnoses the common failure mode in that "thinking before retrieval'' must be evaluated as a control problem over action selection, not as a prompt-format change.
https://arxiv.org/abs/2607.24800
Glaucoma is a leading cause of irreversible blindness worldwide, yet most automated diagnosis systems rely on opaque deep-learning models that offer little clinical interpretability. We present GlaKG, a biomarker-centric fundus knowledge graph that integrates structural biomarkers, clinically grounded rules, and image features to produce traceable reasoning for glaucoma diagnosis and risk stratification. GlaKG encodes six entity types (Fundus Image, Optic Disc, Neural Rim, Pathology, Diagnosis, Risk Level), eight relation types, and 11 clinically validated rules into a unified graph, so that every prediction is accompanied by an explicit reasoning chain linking biomarker evidence to activated clinical rules. To keep knowledge-based reasoning strictly separate from label information, we adopt a post-processing fusion framework that combines ResNet50 image embeddings with a normalized KG reasoning-chain score via a tunable weight alpha, with all fitting confined to the training split. On a publicly available, AI-annotated fundus dataset, GlaKG reaches F1 = 0.9953 for binary glaucoma classification and 0.930 accuracy with 0.922 weighted F1 for four-class risk stratification; we report openly that the dataset's biomarker annotations are highly label-correlated, and therefore frame these figures as an upper bound attainable with clean structured biomarkers rather than as leakage-free image-only performance. Feature-importance analysis shows KG-derived and biomarker features contributing near-equally (51.1% vs. 48.9%), and the reasoning chain flags borderline cases by exposing low chain scores rather than failing silently. GlaKG's central contribution is therefore a clinically auditable reasoning framework that complements raw predictive performance by explicitly exposing the biomarker evidence and rule activations behind each decision.
https://arxiv.org/abs/2607.04673
Accurate prediction of patient-specific therapeutic response from pre-treatment transcriptomes is hindered by the scarcity of matched clinical response labels and post-treatment molecular profiles. Preclinical transfer-learning models can simulate drug-induced expression changes but are often hard to interpret and unstable, whereas knowledge-graph methods provide mechanistic context yet remain static and fail to capture drug-induced transcriptomic perturbation dynamics. We propose PREDIKTOR, a patient-centered multi-view framework that aligns a personalized network view with a transferable transcriptomic perturbation view to predict clinical drug response. For each patient, we construct an individualized gene regulatory network from tumor expression using DysRegNet and augment it with drug-target links from DrugBank; a graph neural encoder yields a drug-centric, mechanistically grounded embedding. In parallel, a frozen condition-specific gene-gene attention model pretrained on LINCS L1000 generates a simulated post-perturbation transcriptomic profile for the same patient-drug pair. We align the two views in a shared latent space via a CLIP-style contrastive objective with drug-context hard negatives, then concatenate the representations for end-to-end response classification. On TCGA, PREDIKTOR consistently outperforms state-of-the-art baselines under patient-, drug-, and tissue-split evaluations, and transfers zero-shot to the I-SPY2 trial, improving AUROC by 5.6% over competing methods. The aligned embeddings yield stable gene and pathway attributions that recover known mechanisms, supporting actionable and interpretable precision oncology.
https://arxiv.org/abs/2607.04557
Multi-entity compositional questions pose significant challenges to existing retrieval-augmented language models. Conventional methods fall into a dilemma: standard RAG lacks dynamic reasoning, traditional Graph-RAG is limited by structural sparsity, and LLM-constructed Graph-RAG incurs prohibitive costs. We propose \textbf{\fwa}, a unified framework that embeds unstructured text into structured knowledge graphs, creating a heterogeneous network for flexible evidence retrieval. Reasoning is formulated as adaptive structure induction, learned via a robust two-stage process: (1) imitation learning distills heuristic expert signals, and (2) reinforcement learning refines the policy using LLM-driven preference rewards. Experiments demonstrate that {\fwa} effectively merges textual richness with structural knowledge, outperforming SOTA baselines in answer accuracy and reasoning fidelity while maintaining extremely low token costs and near real-time inference((code available at this https URL) .
https://arxiv.org/abs/2607.19398
Knowledge graphs (KGs) that underpin Graph-based Retrieval-Augmented Generation (Graph-RAG) are increasingly built automatically by LLM-driven extraction rather than curated by experts. Proper evaluation would require instrumenting all pertinent stages: extraction, graph construction, and inference, coherently enough to localize failures, so that a failure at one stage is not discovered as a wrong answer at the end. We introduce TRIAGE, a stage-aware instrumentation framework for automated, document-grounded graph-RAG that asks not only whether the underlying graph can be trusted but at what cost it can be queried. TRIAGE attaches stage-specific, independently interpretable metrics to three stages: the KG Implementation (triple confidence, source coverage, and schema and canonicalization checks), the KG Validation by expert (graph-level structural quality, with correctness and completeness computed only as offline calibration when a reference is available), and the KG Usage (retrieval coverage, faithfulness, and retrieval cost); the deployed metrics need no gold annotations, the gold-requiring ones serving only as offline calibration. At usage time these metrics form a diagnostic chain of necessary conditions whose first broken link localizes the failure, and the diagnosis maps to the stage levers that can remedy it: extraction, graph and schema, or retrieval. TRIAGE is a theoretical framework with a proof of concept and a reproducible evaluation protocol.
https://arxiv.org/abs/2607.03447
The rapid growth of publicly available digital information has rendered manual open-source intelligence (OSINT) analysis insufficient for modern intelligence, cybersecurity, and cyber investigation. Large language models (LLMs) and agentic AI systems, capable of tool use, multi-step reasoning, and iterative intelligence generation, have emerged as promising solutions, yet evaluation frameworks have not kept pace with reported capabilities. This survey systematically reviews 74 studies and makes four contributions. First, it establishes agentic AI as a distinct analytical category rather than an extension of LLM prompting, organising the literature through an 11-category taxonomy covering LLM foundations, agentic architectures, retrieval-augmented generation (RAG), knowledge graphs, prompt engineering, domain adaptation, evaluation benchmarks, and risk. Second, it identifies the hallucination-validation gap as a corpus-level finding: although hallucination is recognised as a major reliability concern in over twenty studies, end-to-end hallucination is empirically measured in only one OSINT-specific RAG-based system, non-reproducible conditions, while related reasoning and factual-correction studies evaluate general-domain question answering rather than OSINT. Third, it maps existing research to the OSINT lifecycle, showing strong support for collection and analysis but limited coverage of verification, reporting, dissemination, and decision support. Fourth, it derives a ten-point research agenda addressing evaluation, benchmarking, hallucination measurement, adversarial robustness, dark-web coverage, multimodal intelligence, and governance. It concludes that a human-AI co-pilot model, where LLMs assist collection and triage while analysts retain responsibility for verification and decision-making, represents the most defensible near-term deployment architecture.
https://arxiv.org/abs/2607.03233