Argumentative component detection (ACD) is a core subtask of Argument(ation) Mining (AM) and one of its most challenging aspects, as it requires jointly delimiting argumentative spans and classifying them into components such as claims and premises. While research on this subtask remains relatively limited compared to other AM tasks, most existing approaches formulate it as a simplified sequence labeling problem, component classification, or a pipeline of component segmentation followed by classification. In this paper, we propose ITFACD, a novel approach based on instruction-tuned Large Language Models (LLMs) using compact instruction-based prompts, and reframe ACD as a language generation task, enabling arguments to be identified directly from plain text without relying on pre-segmented components. Experiments on standard benchmarks show that our approach achieves higher performance compared to state-of-the-art systems. To the best of our knowledge, this is one of the first attempts to fully model ACD as a generative task, highlighting the potential of instruction tuning for complex AM problems. Our code and the datasets used are openly available in the following GitHub repository.
https://arxiv.org/abs/2609.24855
Forest inventories increasingly rely on artificial intelligence (AI) models to derive forest attributes from large-scale 3D point clouds. Current models are typically specialized to a single task, sensor, and forest type, making adaptation expensive in terms of annotations, computation, and expertise. We ask whether a single pretrained model can instead learn transferable representations across diverse forest inventory settings. Inspired by recent developments in language modelling and computer vision, we take a step toward a foundation model (FM) for 3D forestry. Using LitePT as backbone, we first establish a strong supervised baseline that sets a new state of the art on forest semantic and instance segmentation, tree species classification, and age regression benchmarks. We then curate a large-scale unlabelled corpus spanning airborne, UAV, and mobile laser scanning across diverse forest ecosystems, and pretrain the same backbone using self-supervised learning. We systematically evaluate representation learning strategies by comparing training from scratch, supervised pretraining, and self-supervised pretraining across four representative forestry tasks, under varying annotation budgets. Compared with training from scratch, self-supervised pretraining accelerates model convergence and consistently improves performance when annotations are scarce. Compared with task-specific supervised pretraining, self-supervised pretraining yields more transferable representations across downstream forestry tasks. These findings identify the practical regime in which pretrained representations are most valuable and suggest that instance discrimination, rather than forest semantics, is the main remaining obstacle to a general-purpose 3D forest foundation model. Code and models are available at: this https URL.
https://arxiv.org/abs/2609.24787
Mitotic figure (MF) analysis supports tumor grading and prognostic assessment, but automated models remain sensitive to differences in tissue type and image acquisition. We present MiTHras, a task-specific pretraining framework that combines pseudo-label-guided image- and token-level contrastive learning with masked reconstruction. We construct TCGA-MF-Pseudo, a corpus of 1.8 million cell-centered images from 14 TCGA cohorts spanning 11 organ sites. Comprehensive evaluation on MF classification, detection, count-based survival prediction, and subtype classification demonstrates the efficacy of MiTHras. It achieves the highest mean F1 on all three MF classification benchmarks and both subtype benchmarks. MiTHras also outperforms general-purpose and pathology foundation encoders by a larger margin under frozen-encoder linear probing than under full fine-tuning. Although detection gains are modest due to a shared candidate-detection stage, ablations confirm that token-level supervision improves typical-versus-atypical classification and linear probing. These findings establish that MiTHras yields robust, transferable representations for automated mitotic activity assessment.
https://arxiv.org/abs/2609.24736
Latent diffusion models now dominate medical image generation, and every such pipeline rests on a \emph{tokenizer} that compresses images into the latent codes for image generation to operate on. Thereby, the tokenizer choice bounds every downstream task from reconstruction fidelity and generation quality to the representations available for downstream analysis. Yet, medical imaging pipelines routinely utilize tokenizers from natural imaging on the hypothesis that their behavior carries over. However, this is an assumption never tested in the medical imaging regime, where datasets are orders of magnitude smaller and images exhibit far lower inter-sample variance. We present a systematic evaluation of medical image tokenizers evaluating thirty configurations across ten model families on twelve datasets at three compression factors, spanning reconstruction, generation, latent geometry, downstream classification, and memorization. We find that (1) performance on image reconstruction and generation strongly correlate, unlike prior reports on natural images; (2) modern tokenizers use nearly all of their codebook entries, but still leave most of the latent space unused; (3) training-set memorization is mild and is further suppressed by stronger latent space compression; and (4) discrete quantization can largely preserve downstream classification, with lookup-free schemes being the main exception.
https://arxiv.org/abs/2609.24691
Reliable uncertainty estimation is essential for deploying object detectors in autonomous systems operating in uncertain environments. Evidential Deep Learning (EDL) provides a principled framework for uncertainty-aware classification by representing network outputs as evidence and interpreting predictions through subjective logic. However, existing evidential object detectors typically combine evidential classification with regression uncertainty models that do not share the same theoretical foundation. In this work, we propose an evidential version of YOLOv8 in which both classification and bounding-box regression are formulated within a common evidential framework. Our approach exploits YOLOv8's distribution-based bounding-box representation, allowing the evidential formulation to be applied not only to classification but also to localisation. As a result, both tasks produce belief, uncertainty, and probability estimates that can be interpreted within the Dempster--Shafer framework. Experiments on KITTI, MUSES, and nuScenes show that the resulting detector remains broadly competitive with standard YOLOv8 in terms of detection accuracy while providing a localisation uncertainty that effectively discriminates between correct and erroneous detections. Moreover, this uncertainty becomes increasingly discriminative under domain shift.
https://arxiv.org/abs/2609.24668
How should natural language processing models be selected and adapted for global health literature in environments where annotated data and computational resources are limited? This thesis investigates these challenges through experiments on semantic tag discovery, named entity recognition (NER), and multi-label topic classification. First, skip-gram word2vec models trained on progressively larger specialized corpora are compared with BioWordVec to assess how corpus size and domain context influence tag discovery. Vocabulary coverage and qualitative evaluation indicate that broader coverage does not necessarily yield more useful domain-specific associations. The analysis then turns to entity extraction, comparing convolutional spaCy models with a RoBERTa-based transformer on 1,000 annotated sentences. Under a lenient scoring protocol, the transformer achieves 0.80 micro-F1 versus 0.65-0.69 for convolutional models, but takes 82 seconds rather than 5-6 seconds. This trade-off motivates fine-tuning convolutional models and integrating a disease recognizer that achieves 81.33% test F1 on the NCBI Disease Corpus. Combined with PDF preprocessing, entity filtering, and MeSH enrichment, the resulting pipeline supports document-level indexing. To complement entity extraction with thematic annotation, MiniLM-based few-shot classification is compared with BART-MNLI zero-shot inference across 50 topics and 1,000 handcrafted test sentences. BART-MNLI achieves 95.2% single-label accuracy versus 59%; reported multi-label accuracies are 88% and 32% under partly manual assessment. However, its higher inference cost limits practical integration. The results show where domain specialization and lightweight adaptation offer practical value, and where transformer accuracy justifies higher inference costs, providing an empirical basis for building knowledge systems under resource constraints.
https://arxiv.org/abs/2609.24625
The proposed pipeline integrates a representation-flow convolutional neural network with a dynamics- and uncertainty-aware tree-based Gaussian Process classifier. In this framework, latent motion dynamics are exploited both as discriminative representations and as a source of input uncertainty, enhancing robustness against temporal variations and abnormal motion transitions. Compared with conventional deep learning approaches, the proposed strategy requires less training data and offers improved computational efficiency. To further improve classification performance, we introduce novel semantic-aware compound kernels that effectively capture semantic, flow, and dynamic information embedded in surgical video features. In addition, uncertainty-aware kernels are developed to strengthen the robustness and practical applicability of the compound kernel framework. The proposed method is evaluated on two benchmark datasets, namely the JIGSAWS and the Cataract-LMM (Capsulorhexis) datasets. Experimental results demonstrate strong performance across both datasets, including the LOSO and LOUO evaluation protocols on JIGSAWS, including the subject-independent LOUO protocol on JIGSAWS, on which the framework attains a mean accuracy of \ph{96.9}\%; results under the within-subject LOSO protocol are reported for comparability with prior work, achieving competitive accuracy while substantially reducing computational cost. Overall, the proposed pipeline provides an efficient and accurate framework for video-based surgical skill assessment.
https://arxiv.org/abs/2609.24619
Neural Cellular Automata (NCAs) are a new type of neural network architecture which enable accurate and robust inference at extremely small model sizes. Recently, NCAs have advanced to become interesting low-resource alternatives to convolution- and attention-based architectures for various tasks such as image analysis, synthetic image generation, and simulation. The rapid development and increased research interest necessitate a comprehensive review of the emerging technology. This review provides an overview of the fundamentals of NCAs, applications to medical imaging, as well as insights into the state of the art. We analyze recent modifications to the originally proposed NCA architecture with respect to their efficiency and accuracy. Furthermore, we review practical applications in real-world scenarios with a focus on medical image analysis, segmentation, classification, registration, depth estimation, and image synthesis. Finally, we identify several advantages of NCAs, research gaps, and conclude with an analysis of future opportunities for NCAs in medical applications in confined settings or areas that have particular demands for robustness or efficient data processing.
https://arxiv.org/abs/2609.24595
Computational social science increasingly relies on large language models for text annotation, and the validity of published findings now rests on the labels generated by such models. Decision models, a new model class built for categorical question answering, answer typed questions with a choice, a probability distribution over the label set, and a confidence score rather than free text, at a small fraction of frontier inference prices. Whether their answers are accurate, and whether that stated confidence can be trusted on social science constructs, are unknown. Here, we mirror the evaluation of Ziems et al. (2024) on 18 computational social science classification tasks (7,977 items), comparing the first commercial decision model and two open-weight counterparts against 19 frontier and open-weight language models under the same zero-shot protocol. The decision model trails the per-task best LLM on 14 of 15 evaluation tasks, with a median deficit of 11.6 macro-F1 points, at a median 44 times lower measured cost. Its confidence is better calibrated than the verbalized confidence of 16 of the 19 LLMs, yet three frontier models show lower median calibration error (0.157 against 0.066). While items above 0.9 confidence are typically labeled accurately (median accuracy 0.815), on one task, empathy in peer-support dialogues, the model reports high confidence while performing near chance. Nonetheless, our results suggest that decision models are useful as a first step in the annotation pipeline: routing low-confidence items to an LLM matches or exceeds the LLM alone at a quarter to half of its cost.
https://arxiv.org/abs/2609.24574
Functional annotation of newly sequenced proteins remains a bottleneck in molecular biology: the number of sequences in public repositories grows far faster than the capacity for manual curation. Most computational approaches consider annotation as multi-label classification over a fixed ontology, which constrains predictions to a predefined label set. In this work we study the the protein annotation as a sequence-to-text generation problem. We fine-tune the 3B-parameter Ministral 3 base model with QLoRA (4-bit NF4 quantization with low-rank adapters) on sequence annotation pairs. We assess predictions with an LLM-as-expert protocol: a GPT model prompted as a senior molecular-biology curator scores organism identification as binary and function annotation quality. We conclude that QLoRA-fine-tuned compact LLMs can generate curator-style annotations with genuine biological value for a substantial subset of proteins. We also discuss future directions in data quality, model scaling, and evidence grounding that are needed to make the approach sufficiently reliable for practical use.
https://arxiv.org/abs/2609.24538
AI coding assistants are becoming co-authors of production software, yet their evaluation centers on functional correctness, leaving open whether their code differs from human code in the quality dimensions dominating lifecycle cost. We compare human-written and AI-generated code at scale: 787,562 function pairs across Python, Java, and C, each human function mined from open-source repositories paired with implementations generated from its docstring by three AI assistants (OpenAI GPT models, DeepSeek-Coder, Qwen2.5-Coder). We characterize structural complexity and statistical naturalness, and map static-analysis findings onto Orthogonal Defect Classification for defects and the Common Weakness Enumeration for vulnerabilities, making authors and languages directly comparable. AI-generated code is structurally compressed and stylistically templated: roughly half the size and branching of human code, clustering apart at the style level. Defect profiles differ in kind: human code concentrates issues of mature codebases, AI code repetitive boilerplate; security is language-dependent, with LLMs producing more, and more severe, findings in Python and Java but fewer high-severity memory-safety findings than humans in C. Once size is controlled for, complexity metrics carry little signal, while naturalness separates authors. Finally, we release CQBench, a benchmark of 27,346 issue-prone tasks with baselines and an evaluation pipeline for quality assurance and security testing.
https://arxiv.org/abs/2609.12708
Recognizing hand-drawn geometric shapes is a foundational sub-problem of sketch recognition, with applications in education, human-computer interaction, and diagram digitization. This paper presents the design, implementation, and evaluation of a desktop application that recognizes four basic hand-drawn geometric shapes, circle, square, rectangle, and triangle using a compact Convolutional Neural Network (CNN). A dataset of 2,000 labeled 28x28-pixel shape images was collected independently and released publicly. The classifier consists of three convolutional blocks (16, 32, and 64 filters) with max-pooling, an in-model data-augmentation stage (random horizontal flip, rotation, and zoom), a dropout-regularized dense layer of 128 units, and a 4-way linear output layer, totaling 97{,}956 trainable parameters. The network is trained with the Adam optimizer on a sparse categorical cross-entropy objective computed directly on logits. On an 80/20 train-validation split, the model achieves 94.80% training accuracy and 96.01% validation accuracy with a validation loss of 0.1437. A Tkinter-based graphical interface allows a user to draw a shape with the mouse and receive an immediate class prediction with a confidence score. We situate this system within the broader sketch and shape-recognition literature, compare its accuracy against related hand-drawn shape classification studies, and discuss the limitations inherent to a small, single-contributor dataset. The complete source code, trained model, and per-class datasets are released publicly to support reproducibility.
https://arxiv.org/abs/2609.24384
In-context learning (ICL) based on large language models (LLMs) has shown promising potential in alleviating performance bottlenecks caused by the limited availability of annotated data in Named Entity Recognition (NER). However, existing methods still face issues of retrieval misalignment and generation uncertainty, making their performance heavily dependent on the LLM's capabilities. As the parameter scale of LLMs decreases, their performance in few-shot settings deteriorates significantly. In this paper, we propose a novel unified retrieval-augmented framework, URA-NER, including three key components: Progressive Granularity Retrieval (PGR), Model-aware Representation Enhancement (MaRE), and Reason-aware Knowledge Verification. PGR is a two-stage retrieval mechanism that achieves stage alignment. It first retrieves demonstrations for span detection based on the query's global semantics, and then for type classification based on the specific entity context, providing fine-grained local information. Moreover, MaRE employs entity pre-recognition to guide the construction of representations, ensuring the query and demonstrations are aligned within the LLM's semantic space and attention pattern. In addition, to mitigate generation uncertainty, we propose RaKV, a closed-loop "generation-retrieval-verification" process. It explicates the LLM's reasoning paths, leverages them for the retrieval of external knowledge, and reorganizes the knowledge into verification evidence aligned with the original reasoning paths. We conduct extensive experiments on multiple low-resource NER datasets. Results demonstrate that URA-NER significantly enhances the performance of LLMs under low-resource settings, with particularly pronounced gains for smaller LLMs, achieving new state-of-the-art results on several benchmarks.
https://arxiv.org/abs/2609.24372
Deception plays a central role in Intelligence operations, yet it remains difficult to analyse systematically without expert knowledge of reasoning patterns and cognitive manipulation. In computational argumentation, for instance, no scheme-level ground-truth corpora currently exist to support statistical validation. In this paper, we address this by introducing a set of ten argument schemes designed to model distinct forms of deception, each accompanied by structured premises and critical questions. In doing so, we introduce the first dedicated library of argumentation schemes specifically designed for deception analysis, providing a structured foundation for systematically modelling and analysing deception in narrative text. We then present \textit{DeceptionAnalyser}, a browser-based tool that implements these schemes through a two-stage methodology combining LLM-based premise extraction with critical-question-driven evaluation. Our aim is to provide a conceptual and methodological foundation for analysing deceptive reasoning in narrative text. This is precisely what we address in this paper by demonstrating how structured argumentation theory and AI-assisted analysis can support transparent, explainable assessments of potential deception. Because the schemes are designed to flag claims for scrutiny rather than to output a deception verdict, we do not benchmark classification accuracy; instead, we assess the \emph{reliability} of the methodology by measuring the consistency of the tool's premise and conclusion assessments across ten contemporary large language models and repeated runs. We find that scheme detection is highly stable for clear-cut deception and degrades gracefully, in interpretable ways, on more ambiguous intelligence-style narratives.
https://arxiv.org/abs/2609.24369
Cross-domain Named Entity Recognition (CD-NER) aims to transfer the rich knowledge in the source domain to the target domain. Recent studies adopting decomposition or generation paradigms have achieved significant performance improvements, demonstrating high accuracy in entity span detection. However, during entity type classification, models severely suffer from entity type confusion, the erroneous tendency that models classify entities of one type in the text as another similar but incorrect type. To address this issue, we first propose a Multidimensional Confusion Quantification Model (MCQM) that quantifies a model's confusion extent between entity types from three dimensions: source-target hierarchy analysis, semantic similarity analysis, and explicit data evaluation. Moreover, we propose the Progressive Bidirectional Reasoning Chain (PBRC). PBRC leverages the source-target hierarchy and confusion analysis from the MCQM to prompt the LLM to generate two-stage reasoning information. The two-stage reasoning information is utilized to augment the knowledge of the model, significantly mitigating entity type confusion and improving the model's generalization performance. Experimental results demonstrate that our method achieves new state-of-the-art results on all domains of the CrossNER dataset.
https://arxiv.org/abs/2609.24357
While Mamba-based models have shown strong potential for long sequence modeling, adapting them to vision is challenging due to the requirement of local neighborhood correlations and multi-directional spatial contexts for visual understanding. In this paper, we present LiAuto-MindViT, a novel hybrid vision backbone that synergizes the strengths of CNNs, Mamba, and Transformers. The core of our design is the Adaptive Bidirectional Mamba (ABM), which eliminates the directional bias of unidirectional SSMs through bidirectional selective scanning with learnable alpha blending, enabling content-adaptive directional fusion without the overhead of exhaustive multi-path routing. To further accelerate inference, we propose a deployment-friendly Reparameterized ConvSE (RepConvSE) module that leverages structural reparameterization to reduce latency and memory access overhead. Extensive experiments demonstrate that LiAuto-MindViT achieves state-of-the-art performance on image classification, object detection, and semantic segmentation while enabling efficient inference through reparameterization.
https://arxiv.org/abs/2609.24337
We show that a quantized model that keeps its classification accuracy still changes $14$ to $46\%$ of its top-1 retrieval results, and that aggregate ranking metrics reveal only part of this damage. We tie this failure to the gap between the two highest scores and use that gap to decide when a quantized answer can be trusted and where additional precision should be spent. We show that the top-1 result is guaranteed to survive quantization only when this gap exceeds twice the largest rounding error. In classification, scores are the logits, and the loss function pushes the correct class away from other classes, encouraging this gap. In retrieval, scores are query-document scores, and nothing separates the top-1 item from the second. This gap can be measured without labels. Before deployment, it predicts which models will break under quantization, and at deployment time it tells, per input, whether the quantized answer still matches the full-precision answer. Most classification inputs have a gap wide enough to trust the quantized answer, but few retrieval queries do. That gap motivates a different fix in each task. In retrieval, spending extra bit-width on the layers whose quantization moves the gap most recovers up to three-quarters of an extra bit's benefit for half its cost. In classification, routing the few low-gap inputs to full precision recovers most of the lost accuracy at a fraction of the cost.
https://arxiv.org/abs/2609.24322
Post-training often improves task performance but can degrade confidence calibration, leaving post-trained language models (PoLMs) more overconfident than their corresponding pretrained language models (PLMs). Because task-specific labeled calibration data can be costly or unavailable, the corresponding pretrained PLM provides a natural label-free reference for post-hoc calibration. Prior agreement-gated PLM-referenced calibration fits a scalar temperature using only examples on which the PoLM and its PLM reference agree, excluding disagreement examples because direct alignment can drive the fitted temperature excessively high and induce under-confidence. We revisit this binary treatment. A controlled reintroduction diagnostic reveals a non-monotonic aggregate effect: admitting a moderate fraction of disagreement examples can improve calibration, whereas the benefit diminishes as unit-weight inclusion approaches the full disagreement set. We introduce SupportCal, a label-free post-hoc method that retains agreement examples at unit weight and assigns disagreement examples continuous weights based on the own-base PLM's relative support and corroboration from pretrained references selected from a size-compatible candidate pool. We further characterize when the resulting weighted objective admits a finite optimal temperature. Across MedMCQA and MathQA, SupportCal yields lower ECE than the agreement-only baseline for nearly all evaluated target-model configurations; supplementary TweetEval Sentiment results show the same pattern on a fixed-label classification task.
https://arxiv.org/abs/2609.24303
Dynamic Time Warping (DTW) is the dominant approach for measuring similarity between time series, yet standard practice discards the optimal warping path after computing a single distance value, losing local alignment information most relevant to clinical diagnosis. We introduce DiaSeg, a framework that extracts diagonal segments from DTW paths with controlled breaks, characterizing each segment by five geometric features (effective length, interruption count, cost variation, temporal position, and path context), and enabling unsupervised pattern discovery without domain-specific feature engineering. Validated on 91 subjects across six clinical conditions (healthy aging, Parkinson's, Huntington's, ALS, brain tumor, and stroke), three findings emerge. First, diagonal segments form consistent unsupervised patterns (silhouette 0.33) aligned with biomechanical phase annotations, with label-based validation confirming near-perfect separation of healthy and pathological gait (ARI up to 0.986). Second, segments discriminate pathology at 69% (supervised) and 75% (patient-level clustering), with pathology manifesting through distributional shifts in segment length; combining segment and cycle-level features further improves classification to 91.7%. Third, while cycle-based methods achieve higher accuracy (91%), diagonal segments provide phase-specific interpretability unavailable in global representations, localizing where coordination breaks down within the gait cycle. DiaSeg thus transforms DTW from a black-box distance into a source of interpretable temporal features for neurodegenerative disease assessment.
https://arxiv.org/abs/2609.24223
Traditionally, the reliability of news publishers is assessed by expert organisations that evaluate editorial practices, transparency and factual standards at source. When this process is translated into a computational approach, the problem is often formulated at the level of individual articles, with models being trained on a set of pre-labelled articles and their performance being evaluated in a test phase. In this work, we investigate news source reliability inference as a source-level prediction problem. We propose a two-stage framework in which transformer-based language models first estimate the reliability of individual articles and subsequently aggregate article-level predictions to infer the reliability of previously unseen publishers. To approximate realistic deployment conditions, we enforce a strict publisher-disjoint evaluation protocol, ensuring that no publisher appears in both training and test sets. Experiments on 19,476 political news articles from 439 English-language publishers labeled with NewsGuard reliability ratings show that aggregation substantially improves robustness and performance, increasing accuracy from approximately 0.60 at the article level to 0.69 at the publisher level. Finally, we analyze how prediction errors vary across political orientations, revealing statistically significant associations between political leaning and misclassification patterns. Overall, our findings show that publisher reliability can be inferred from aggregated textual signals alone, supporting scalable and content-based approaches to automated news source assessment.
https://arxiv.org/abs/2609.24219