Knowledge_Graph
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TRACE-CTI: Auditable Post-Extraction Governance of TTP Claims with Knowledge Graphs
2026-07-27 15:33:18Federico Valletta, Giacomo Longo, Enrico Russo, Alessio MerloAbstract
Security Operations Centers increasingly rely on automated mapping of Cyber Threat Intelligence reports to MITRE ATT&CK, yet extractor outputs remain fallible and are often stored without the evidence, provenance, and validation history needed to decide whether an individual mapping should be trusted. We present TRACE- CTI, a post-extraction claim-governance framework that preserves run-level Predictions, aggregates them into configuration-level GraphAssertions, materializes setup-deduplicated corroboration as ConsensusAssertions, and exposes only GraphAssertions backed by policy-compliant validation grounds. The framework retains native evidence granularity, complete extraction provenance, versioned trust decisions, and non-destructive revocation history. We evaluate TRACE-CTI on two public CTI corpora comprising 65 reports and 5,303 sentences, using a controlled 2 x 3 matrix of retrievers and generator families, incrementally ingested across six GraphVersions. All setups are incorporated without schema modification; provenance paths remain complete, operational scopes remain disjoint, and every trusted GraphAssertion has an active qualifying validation ground. Cross-generator-family setup pairs exhibit greater output diversity than same-family pairs. At the final graph state, increasing setup support from k >= 1 to six-setup unanimity raises gold-aligned precision from 25.3% to 90.6%, while recall decreases from 88.2% to 16.3%. The graph also directly answers seven questions about provenance, trust, versioning, dependency, disagreement, and review-queue that the evaluated minimal flat output cannot fully answer without enrichment or reprocessing. These results support explicit, auditable governance of extracted TTP claims; the observed corroboration trajectory is descriptive and does not establish statistical independence or a causal model-family effect.
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URL
https://arxiv.org/abs/2607.24563
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LLM-Assisted Ontology Engineering and Construction of a French Legal Knowledge Graph
2026-07-27 15:26:26G{\'e}nesis Montenegro (WIMMICS), Mokhtar Boumedyen Billami (WIMMICS), Catherine Faron (WIMMICS), Fabien Gandon (WIMMICS), Pierre Monnin (WIMMICS)Abstract
Maintenance regulations are complex legal texts that are difficult to exploit when addressing a specific case and challenging to integrate into operational systems. This paper presents a two-stage LLM-assisted workflow for French maintenance regulations: ontology engineering from a SEMLEG-based core ontology, followed by construction of an ontology-grounded French legal knowledge graph. The first stage consists in the open extraction of typed entities and triples from a stratified corpus sample, the normalization of labels through embedding-based fusion, and the induction of candidate object properties with their signature (domain and range). The second stage uses the resulting ontology to guide the closed extraction of triples and RDF graph construction over the full corpus. Experiments with GPT-4.1 and mistral-large-2512 show robust structured outputs, near-complete class alignment, and a substantial reduction of duplicated entities and predicates after fusion. Fewer than 20% of triples introduce unseen properties, while lower exact signature compliance reveals new domain-range combinations for existing predicates. These results point to predicate normalization and the validation of newly observed relation signatures as key refinement steps for industrial maintenance settings.
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URL
https://arxiv.org/abs/2607.24551
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Making Mathematical Knowledge Explainable, Accessible and Interoperable Through Large Language Model Integration
2026-07-27 14:53:40Jan Range, Bj\"orn Schembera, Dominik G\"oddekeAbstract
Mathematical models are central to formalizing research problems, yet their documentation often falls short of FAIR principles. Knowledge bases such as the Mathematical Model Database (MathModDB) address this gap by providing curated, semantically rich representations of mathematical models. Built on Wikibase, the same open-source infrastructure underlying Wikidata, MathModDB utilizes Semantic Web technologies to support Linked Open Data, collaborative editing, and the storage of semantically enriched metadata, making it a domain-specific knowledge graph within the broader Wikidata ecosystem. However, access to MathModDB currently requires either navigating a complex web interface or proficiency in SPARQL and Wikibase APIs, posing significant barriers for potential users. In addition, the combination of such curated knowledge bases with actual research data stored, e.g., in Dataverse repository instances, remains a challenge. To overcome these limitations, we propose integrating Large Language Models (LLMs) with MathModDB via a Model Context Protocol (MCP) server that exposes a vector-indexed schema retrieval and Steiner-tree-based join planner, combining dialogue-based natural language interaction with curated, epistemically grounded knowledge. Although instantiated on MathModDB, the architecture can be applied to other Wikibase-based systems. We demonstrate that this approach enables epistemically grounded LLM usage, improves model explainability and accessibility beyond what the standard Wikibase interface offers, and simplifies interoperability with external databases and tools, such as Dataverse data repositories. We illustrate the benefits of combining the accessibility of an LLM with the epistemic safety of a curated knowledge base through the adaptability of the MCP protocol by two use cases involving mathematical models in the fields of continuum mechanics and enzyme kinetics.
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https://arxiv.org/abs/2607.24512
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Integrating Factual and Normative Industrial Knowledge via Constraint-Aware Graph Attention for Process Plan Recommendation
2026-07-27 09:45:05Yuntong Chen, Yingqi Li, Yingying Xiao, Ziang Wang, Zewei Liu, Jiahao Liu, Xitian Tian, Lijiang HuangAbstract
Integrating heterogeneous industrial knowledge, including factual relations and decision constraints, remains a core challenge in industrial information systems. Machining process planning exemplifies this problem because engineers must select operations by combining material properties, feature characteristics, and quality requirements. Existing methods rely mainly on similarity retrieval or classification, without a unified ranking objective or standardized evaluation. We propose PCA-GAT, which formulates machining process plan recommendation as a knowledge graph enhanced collaborative filtering problem. Bayesian Personalized Ranking provides the learning objective, while Recall@K and NDCG@K define evaluation. The knowledge graph supplies semantic structure when collaborative signals are sparse. Four domain constraints, material compatibility, precision requirements, feature applicability, and operation sequencing, are introduced as attention biases during graph propagation. Type-specific weights learn their importance, and an adaptive gate adjusts their influence using local context. On a real aerospace dataset with 115 parts and 507 plans, PCA-GAT achieves Recall@1 = 0.9087 and strong cold-start robustness, with about half the degradation of the strongest baseline under severe sparsity. Ablation studies show that knowledge graph enrichment is essential, constraints add value, and ungated constraint injection can hurt performance. The learned weights identify material-operation compatibility as the dominant factor, consistent with domain expertise. Results on three public benchmarks show no degradation when constraints are absent, supporting generalization beyond manufacturing. This study establishes a standardized recommendation protocol for engineering process planning and benchmarks seven methods across three categories, showing that knowledge representation is the main bottleneck.
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URL
https://arxiv.org/abs/2607.24213
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PULSE: An Executable Contract Language for Spatiotemporal Knowledge Graph Engineering
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Knowledge graph engineering often distributes accepted state, observations, constraints, processes, and hypothetical scenarios across artifacts whose combined execution contract remains external. We present PULSE, an Object-Process-Methodology-inspired language that localizes four operational roles and their write effects in one typed runtime. Here, modes denote operational roles rather than modal or deontic logic. The implemented contract fixes evidence non-overwrite, branch isolation, grounded multi-subject timers, guarded state change, and declaration-ranked event ordering over time and space; an external runner still decides whether evidence becomes an authoritative move. GeoSPARQL, SOSA, and SHACL remain generated views. A core calculus gives an effect-confinement lemma and six safety properties. Lean 4 checks kernel analogues for positions, evidence, clocks, monitors, atomicity, and branch source retention; 88 tests, 3,534 bounded checks, and 32 Lean/Python runtime-kernel cases bound the implementation claim to the checked cases. First-author implementations of a standards composition and a separate Sismic statechart reproduce the tested cold-chain trace. Across 37,440 generated temporal traces, PULSE matches a separate workflow and distinguishes ten single-field mutants. On the complete NOAA IBTrACS since1980 subset it agrees with GEOS and an event sweep on 1,476,290 transition-zone pairs, including 4,800 sampled and 12,831 duration-qualified events. Project-specific GeoSPARQL probes measure interface coverage. Overall, the results support contract localization, safety arguments, and trace parity for the tested fragment; language superiority and usability remain outside the evaluation.
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URL
https://arxiv.org/abs/2608.02630
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Mwando: Leveraging AI to Preserve and Teach shiKomori
2026-07-26 06:11:11Naira Abdou Mohamed, Haidar Nassur Said Ali, Mohamed Hazra, Naoufal Mohamed Soibira, Roushnaty Ali YamaniAbstract
This paper presents Mwando, a virtual educational assistant designed to support the teaching and preservation of shiKomori, the language of the Comoros Islands. The system covers the four main dialectal variants (shiNgazidja, shiMwali, shiNdzuani and shiMaore) through a knowledge base constructed from phrases, proverbs, dictionaries and grammar lessons. A multi-agent architecture combining vector search, a knowledge graph and web search fallback enables accurate and context-aware responses. Evaluation on 500 queries demonstrates strong performance on vocabulary lookup and grammar explanations, while qualitative case studies illustrate both capabilities and current limitations. This work represents an initial step toward computational support for shiKomori and provides a blueprint for developing AI-powered educational tools for other low-resource languages.
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https://arxiv.org/abs/2607.23481
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Co-Evolving Graph and Text Memory for Training-Free Multi-Hop Question Answering
2026-07-25 16:29:38Hieu Man, Thien Huu NguyenAbstract
Multi-hop question answering requires coordinating relational and textual evidence across reasoning steps, a combination neither a text corpus nor a knowledge graph can supply alone. Prior work often emphasizes only part of this loop: graph-augmented RAG retrieves from a pre-built or query-updated graph, KGQA systems search within topic-centered subgraphs, and memory-augmented agents maintain evolving memories without continuously reconciling graph memory with textual context. We propose Co-E, a training-free system built around synchronized bidirectional graph-text working memory. A synchronization cycle consolidates textual memory, extracts relational triples into graph memory, and injects graph facts back into the generation context. Because both memories are maintained, they shape subsequent retrieval and generation. Evaluated on six multi-hop QA benchmarks, Co-E improves over comparable training-free open-backbone baselines and is competitive with larger or trained systems.
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https://arxiv.org/abs/2607.23278
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An Ontology for Machine Learning Interatomic Potentials
2026-07-25 14:16:09Daniel Hern\'andez, Jong Hyun Jung, Yuji Ikeda, Yongliang Ou, Pranav Kumar, Tom Sch\"achtel, Wenchuan Liu, Xin Li, Xi Zhang, Xiang Xu, Lifang Zhu, Fritz K\"ormann, Steffen Staab, Blazej GrabowskiAbstract
Machine learning interatomic potentials (MLIPs) approximate quantum-mechanical energies and forces---conventionally computed by density functional theory (DFT) or wave-function methods---at a fraction of the cost. The field encompasses a growing ecosystem of algorithms, training datasets, hyperparameters, and target materials, yet the metadata needed to systematically compare, reproduce, and build upon MLIP studies remains scattered across papers, scripts, and ad-hoc file formats. We present the MLIPs ontology, an OWL 2 DL ontology that captures the concepts needed to describe MLIP methods, their hyperparameters, training datasets with DFT provenance, and published benchmarks. The ontology is organized into three modules---Method, Training Data, and Benchmark---and connects existing ontologies in materials science (MDO, CMSO/ASMO) and machine learning (ML-Schema), complementing dataset-side schemas such as Croissant. It declares 27 formal axioms enforcing data completeness and consistency, including property chains that link trained models to their methods and training data. We demonstrate the ontology through a running example based on Moment Tensor Potentials and evaluate it through competency-question execution on a 20-paper seeded knowledge graph, OWL reasoning, and comparison with existing ontologies.
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URL
https://arxiv.org/abs/2607.23219
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Share No More Than the Request Requires: Federated Disclosure for Perspective-Aware AI
2026-07-24 23:37:38Sourena Khanzadeh, Daniel Platnick, Marjan Alirezaie, Hossein RahnamaAbstract
Modern AI systems bring societal risks such as mass surveillance, extreme concentrations of power, and loss of user autonomy---calling into question a model where third-parties collect and control massive amounts of user data. Users require a sovereign system to securely own, govern, and disclose their context while remaining compliant across regulated domains with strict provenance, interpretability, and policy adherence. Perspective-aware AI approaches this by transforming a user's aggregated personal data into a structured identity model called a \emph{Chronicle}: a temporal knowledge graph that represents and grows with the user. Chronicles support the secure disclosure of context across federated networks. A Chronicle holder may expose a queryable, authorized view that a third-party agent may consult without centralizing anyone's data. This paper explores the problem of minimum-necessary disclosure across domain boundaries: when a requester's agent queries a Chronicle, how can the system constrain its response to release only what the requester's relationship, stated purpose, and specific task require? We propose \textbf{Provenance Preserving Chronicles} (PPC), a federated protocol that compiles each holder's Chronicle into a compact \emph{authorized evidence subgraph} governed by one rule: \emph{share no more than the request requires}. Holders keep local sovereignty; an access controller projects relationship-aware views over domain-expert ontologies; and a two-phase flow returns provenance-linked text first, releasing raw artifacts only after explicit holder approval. We frame the problem, map gaps in blockchain, P2P, and holder-sovereign designs, define the core constructs, and sketch the protocol with an explicit threat model.
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URL
https://arxiv.org/abs/2607.22953
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NL2SHACL-Bench: A Benchmark Suite for Natural Language to SHACL Translation
2026-07-24 10:25:35Yuchen Zhou, Niels Bobet, Maribel AcostaAbstract
SHACL is a core technology for validating the conformance of RDF knowledge graphs (KGs). Yet, authoring SHACL shapes requires technical expertise that most domain experts lack. Translating natural language requirements into SHACL (NL2SHACL) would lower this barrier. However, there is no dedicated benchmark for NL2SHACL, and evaluating generated shapes requires methods beyond string comparison, as semantically equivalent shapes can differ in serialisation and structure. To tackle these challenges, we present NL2SHACL-Bench, a benchmark suite for natural language to SHACL translation. Using NL2SHACL-Bench, we evaluate four state-of-the-art large language models (LLMs) for this task. Our results show that current LLMs are highly capable of generating syntactically valid SHACL, but still struggle to produce semantically equivalent constraints for complex logical and structural patterns. This indicates that NL2SHACL-Bench provides a meaningful basis for measuring advances in the NL2SHACL state of the art.
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URL
https://arxiv.org/abs/2608.07530
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What Softmax Throws Away: Mass-Aware Attention for Evidence Accumulation
2026-07-24 10:11:22Minwoo Yu, Young-guk HaAbstract
High task performance does not show whether a model retains prediction-relevant structural information in its internal representation. Temporal graph models, for example, can achieve high future-link AUC while basic graph statistics remain difficult to recover from the same representation. We identify one source of this gap in the weighted averaging used by standard attention: when an evidence pattern is repeated, the numerator and denominator grow at the same rate, so inputs with different amounts of accumulated evidence can produce the same aggregate. We propose Mass-Aware Attention (MAA), which generalizes standard L1 normalization to an Lp family. Under repetition, MAA makes the numerator and denominator scale at different rates, retaining the effective number of contributing inputs in the representation magnitude. It adds no supervision, parameters, hidden dimensions, or explicit count features, and recovers standard attention at p=1. Across four continuous-time dynamic graph models and three datasets, MAA improves future-link AUC in 11 of 12 model-dataset cells. Linear recovery from the same hidden representation increases by 4.49% on average, and preferential-attachment recovery improves in all 12 cells after family-wise correction. We also observe consistent evidence in marked temporal point processes, temporal knowledge graphs, retrieval-augmented generation, and spatio-temporal point processes. Information accessibility and task utility remain distinct: NLL improves in MTPP, ranking is largely preserved in TKG, additional information in RAG does not improve the diagnostic head, and downstream LayerNorm can erase the signal in STPP. These results position MAA as a general normalization principle for improving predictor-facing representation informativeness by controlling repetition invariance in standard attention.
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URL
https://arxiv.org/abs/2607.22781
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MedJudgeRAG: Option-Wise Evidence Judgment with Dynamic Knowledge Graphs for Medical MCQA
2026-07-24 06:02:41Seongwon Seo, Seung Hwan Cho, Young-Min KimAbstract
In medical multiple-choice question answering (MCQA), Retrieval-Augmented Generation (RAG) can supplement the domain knowledge of language models (LMs). However, since vanilla RAG indiscriminately utilizes retrieved documents, it can degrade LM performance. To address this, we propose MedJudgeRAG. Our framework represents retrieved documents as a dynamic knowledge graph (KG) composed of entities and relations. For each option, the model judges an evidence verdict from the retrieved documents and the KG. Based on the verdict combination, the model determines a knowledge utilization strategy to reason toward the final answer. These capabilities are trained via supervised fine-tuning using structured reasoning traces generated by a teacher LM. The training employs a weighted cross-entropy loss that differentially weights the KG and reasoning segments. Experiments on two medical MCQA benchmarks demonstrate that MedJudgeRAG consistently outperforms both vanilla RAG and parametric baselines. Furthermore, ablation analysis reveals that the dynamic KG is more effective as graph-conditioned supervision at training time than as an explicit output at inference time. Our code is available at this https URL, and the generated reasoning traces are released at this https URL.
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https://arxiv.org/abs/2607.24838
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Agent-Guided Relational Concept Discovery: Toward Interpretable Surgical Margin Assessment
2026-07-23 15:44:04Nooshin Maghsoodi, Amoon Jamzad, Robert Policelli, Mohammad Farahmand, Dilakshan Srikanthan, Martin Kaufmann, Kevin Y. M. Ren, Shaila Merchant, Sonal Varma, Ross Walker, Doug McKay, John Rudan, Gabor Fichtinger, Parvin MousaviAbstract
Deep learning models can effectively use Rapid Evaporative Ionization Mass Spectrometry (REIMS) data for surgical margin assessment. However, their clinical adoption remains challenging due to limited generalization to operating room conditions. This difficulty arises because models are typically trained on labeled spectra collected from resected tissue samples, while they must operate on noisy, unlabeled data acquired directly during surgery. In addition, the black-box nature of deep learning models makes it difficult to understand and systematically improve their behavior. Concept-based learning offers a promising way to address these challenges by mapping raw measurements to human-understandable concepts. However, supervised concept-based approaches rely on concept annotations, which are difficult to obtain in complex mass spectrometry workflows. We propose Agent-Guided Concept Discovery, a framework that learns meaningful concepts directly from data without requiring predefined concept labels. During training, a reasoning agent refines semantic descriptions of the learned concepts and adaptively adjusts their weight based on diagnostic relevance. These concepts are further grounded using a biochemical knowledge graph to ensure consistency with known metabolic relationships. Across Skin and Breast Cancer datasets, our model improves balanced accuracy and sensitivity over the baseline. In a representative intraoperative case, it shows fewer false positives, indicating better generalization to surgical conditions.
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URL
https://arxiv.org/abs/2607.21437
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From Static Bibliometrics to Dynamic Knowledge Graphs: An LLM-Powered Framework for Modernizing Science, Technology, and Innovation Analytics
2026-07-23 13:56:53Muhsen HammoudAbstract
Bibliometric indicators - citation counts, h-indexes, co-authorship networks - have long anchored science, technology, and innovation (STI) analytics, yet suffer from temporal lag, semantic shallowness, and an inability to capture the non-linear dynamics of contemporary knowledge ecosystems. Dynamic knowledge graphs and large language models (LLMs) have each been proposed as remedies, but neither is sufficient alone: existing scholarly knowledge graphs remain largely static, while LLM-driven pipelines are prone to hallucination, opacity, and corpus bias without structured grounding. This paper proposes a hybrid, symbolic-first framework integrating all three traditions under explicit methodological constraint. Organized across five layers - an open scholarly data backbone, a dynamic versioned knowledge graph, a constrained LLM-assisted semantic augmentation layer, a multi-layer validation pipeline, and an analytics layer - the framework positions LLMs strictly as generators of provisional candidate enrichments. Candidates become analytically admissible only after passing structural, evidentiary, comparative, and selective expert validation, with full provenance recorded at every stage. The analytics layer supports both established bibliometric indicators and extended graph-based analyses, including trend emergence detection, science-to-technology pathway mapping, and policy-oriented gap analysis. The framework's central theoretical contribution is treating validation as the mediating principle between semantic flexibility and epistemic discipline, enabling STI analytics that is semantically richer and temporally more responsive than static bibliometrics while remaining aligned with the evidentiary standards of science-of-science research. Governance considerations addressing reproducibility, bias, and auditability are also discussed.
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URL
https://arxiv.org/abs/2607.21327
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SoftReason: A Fully Differentiable Neuro-Soft-Symbolic Deductive Reasoning Architecture over High-Dimensional Perceptual Data
2026-07-22 17:38:39Wael AbdAlmageedAbstract
In many reasoning problems, the premises are not observed as discrete symbols, but must be inferred from high-dimensional inputs. Further, the predicate vocabulary, argument structure, and trusted evidence are supplied by a Knowledge Graph (KG), or rule definitions. Classical neuro-symbolic pipelines have a discrete interface between perception and deduction. We present a neuro-soft-symbolic architecture for differentiable deductive reasoning over latent perceptual facts and knowledge-provided predicates. SoftReason removes the gradient gap by representing the deductive state as a local soft interpretation tensor over candidate constants and predicates. Perception proposes probabilistic base facts, KG triples enter as high-confidence soft evidence, and every query anchor, predicate choice, and closure update remains differentiable. Our core innovation is a learned differentiable lift of the immediate-consequence operator. It uses predicate-definition embeddings and latent composition channels to form soft body-predicate mixtures, aggregate over all possible witnesses, propose query-conditioned head facts, and update the interpretation through a monotone probabilistic OR. We instantiate the framework on Knowledge-aware Visual Question Answering (KVQA), and demonstrates how SoftReason supports end-to-end perceptual grounding, KG evidence injection, and differentiable deductive closure in one trainable architecture.
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URL
https://arxiv.org/abs/2607.20402
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Language-Specific versus Cross-Lingual Knowledge Graphs for Implicit Aspect Identification in Arabic: A Comparative Study of Reasoning and Adaptation Strategies
2026-07-22 11:59:05Lujain A. AlawwadAbstract
Aspect-based sentiment analysis (ABSA) in Arabic must recover both explicitly stated aspects and implicit aspects that are never named in the text. Implicit identification typically relies on an auxiliary knowledge source (e.g., a knowledge graph (KG)) linking opinion cues to aspect categories, but for a lower-resource language the practitioner faces a design choice: reuse a mature English KG through multilingual embeddings, or build a smaller native Arabic KG. This paper reports a controlled comparison of the two strategies within a single hybrid pipeline, evaluated on three Arabic benchmarks (M-ABSA, SemEval-2016 Arabic, and HAAD). We further compare two adaptation strategies for the generative extractor that feeds the KG -- zero-shot prompting versus task-specific fine-tuning of an 8B-parameter large language model (LLM). The native Arabic KG (Strategy 2) outperforms the cross-lingual English KG (Strategy 1) by +0.199 micro-F1 on M-ABSA and +0.251 on SemEval-2016, gaining on both precision and recall. Task-specific fine-tuning raises explicit-extraction micro-F1 from <= 0.13 (zero-shot) to 0.66-0.76 on M-ABSA and SemEval-2016 (0.45 on the smaller HAAD), confirming that task adaptation, rather than model scale, is decisive in a morphologically rich language.
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URL
https://arxiv.org/abs/2607.20056
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CLARK: Closed-loop Learning for Adaptive Reasoning over Knowledge Graphs
2026-07-22 10:30:45Yousef Khan, Luca Gherardini, Marco Maratea, Joel Arrais, Jose SousaAbstract
Machine Learning models are widely used for automating classification tasks by extracting statistical patterns from data. However, their performance deteriorates if the data distribution changes, making them ill-suited to handle uncertain and evolving information. Moreover, they provide limited support for integrating prior knowledge. To address these limitations, we present CLARK (Closed-loop Learning for Adaptive Reasoning over Knowledge Graphs), a framework that integrates knowledge graphs, symbolic rule mining, and probabilistic reasoning under the Logic Programs with Markov Logic Networks (LP$^{\text{MLN}}$) formalism. Starting from CACTUS-derived KGs, CLARK translates graph structure into an LP$^{\text{MLN}}$ program and iteratively enriches it with candidate rules proposed by symbolic learners. These rules are calibrated through probabilistic weight learning, enabling reasoning under uncertainty and refinement of the underlying graph structure. We evaluate CLARK on two medical datasets, analysing both rule quality and downstream classification performance. Results demonstrate that CLARK leads to improved classification performance and more generalisable inference. Overall, CLARK provides a principled approach to constructing adaptive, interpretable, knowledge-driven models for classification.
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URL
https://arxiv.org/abs/2607.19996
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An Ontology-Guided, Deduplication-Aware Extraction Layer for Knowledge Graph Construction from Heterogeneous Documents
2026-07-22 09:45:26Vaibhav Dangaich, Kevin Lewis, Kundeshwar PundalikAbstract
Large language models extract entities and relationships from unstructured documents fluently but inconsistently: type vocabularies fracture across documents, the same person surfaces under several name variants, relationships duplicate, and distinct individuals who share a name risk silent conflation. This paper presents the design, implementation, and empirical refinement of a production extraction layer that converts a live document stream into a validated knowledge graph aligned to a formal ontology. The system consumes document metadata from Kafka, routes PDF, spreadsheet, Office, and image content through handlers built for each format, and extracts entities and relationships in two passes using a locally hosted Qwen3.5-9B model tuned on the ontology. Its distinguishing component is ontology-guided extraction: the relevant slice of a curated ontology is retrieved live from a graph database by embedding similarity and injected into the extraction prompt, reducing catalog overhead by about 94 percent relative to static domain slices. Extracted results then pass through a refinement pipeline of five stages: deterministic cleaning, merging across chunks, a second pass for relationships, six deduplication algorithms that require no model inference, and an embedding resolution subsystem whose conflict guard no similarity score can override. Evaluation on intelligence corpora improved search recall from roughly 70 to 95 percent with no false merges, and corrected seven classes of silent quality defect, ranging from a bug that truncated source text by a single character to the systematic duplication of entities that carried title prefixes.
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https://arxiv.org/abs/2607.28662
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HERMES: Contrast-Aware Knowledge Graph Reasoning from Clinical Notes for Patient Outcome Prediction
2026-07-22 09:00:41Gia-Bach Nguyen, Hoang-Ha Nguyen, Tuan-Cuong Vuong, Trang Mai Xuan, Duy Quoc Ngo, Tien-Cuong Nguyen, Huan Vu, Thien Van LuongAbstract
Clinical predictive models often rely on structured Electronic Health Record data, such as time-series and procedure codes. While recent approaches have begun leveraging unstructured clinical notes, they typically encode them as flat sequences, which may lose explicit relational and temporal structure present in clinical narratives. In response, we propose HERMES, a graph-based framework that operates exclusively on clinical text while preserving clinical relationships. This approach builds on two key ideas. First, personalized Knowledge Graphs (KGs) are constructed through Large-Language-Model-guided extraction from clinical notes with Contrastive Logic Modeling that explicitly captures temporal dynamics and treatment failures and changes in outcomes. Second, a Graph Attention Network synthesizes patient representations through graph-based learning over the KGs. Experiments on MIMIC-III and MIMIC-IV for in-hospital mortality and 30-day readmission prediction show that HERMES consistently outperforms strong text-only baselines. Our findings demonstrate that explicit relational modeling with Contrastive Logic Modeling significantly advances predictive performance.
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https://arxiv.org/abs/2609.20825
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Sentence Splitter: Uncovering Latent Factual Structure for Self-Supervised Learning
2026-07-22 07:30:39Ahmad Pouramini, Mahsa AfsharizadehAbstract
This paper introduces Sentence Splitter, a self-supervised framework built upon a T5-based encoder--decoder architecture for uncovering the latent factual structure of natural language sentences. The proposed method identifies the semantic boundary between a descriptive prefix (head) and its factual completion (tail) by formulating sentence splitting as a discrete segmentation problem, where a sentence of length $N$ admits $N$ possible split points but only one recovers the intended head--tail structure. Rather than explicitly searching over all candidate boundaries, the model learns to recover the factual completion through probabilistic sequence generation. To eliminate the need for manual annotation, symbolic head--tail pairs are first verbalized into natural-language templates that provide supervision for training the Sentence Splitter. The trained splitter is then applied to raw text to extract aligned prefix--tail pairs, which are subsequently used to train a generative model that proposes additional plausible completions through a lightweight bootstrapping process. This unified pipeline provides a scalable and structure-aware approach to constructing self-supervised training data while bridging symbolic knowledge and natural language. Experiments on both structured and naturally occurring text demonstrate that the proposed splitter generalizes beyond synthetic templates and that the resulting structure-aware supervision consistently improves downstream performance on knowledge graph completion and commonsense question answering, highlighting the effectiveness of recovering latent factual structure for knowledge-centric NLP.
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https://arxiv.org/abs/2607.19845
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